Evidence map›Paper›PMID 38472486›Full record

ArticleMolecular genetics and genomics : MGG2024

Comparative genomic analysis of Pseudomonas aeruginosa strains susceptible and resistant to carbapenems and aztreonam isolated from patients with healthcare-associated infections in a Mexican hospital.

María José Martínez-Gallardo, Claudia Villicaña, Martha Yocupicio-Monroy, Sofía Lizeth Alcaraz-Estrada, Juana Salazar-Salinas, Omar Fernando Mendoza-Vázquez, Gabriel Damazo-Hernández, Josefina León-Félix

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Predicting Strain-Specific Metabolic Capabilities in the GenusComputational and structural biotechnology journal · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

María José Martínez-GallardoLaboratory of Molecular Biology and Functional Genomics, Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Culiacán, Sinaloa, Mexico.ORCID http://orcid.org/0000-0002-4724-063X
Claudia VillicañaCONACYT-Centro de Investigación en Alimentación y Desarrollo A.C. (CIAD), Culiacán, Sinaloa, Mexico.ORCID http://orcid.org/0000-0002-3737-8416
Martha Yocupicio-MonroyPostgraduate in Genomic Sciences, Universidad Autónoma de la Ciudad de México (UACM), Mexico City, Mexico.ORCID http://orcid.org/0000-0001-7885-5656
Sofía Lizeth Alcaraz-EstradaDivision of Genomic Medicine, Centro Médico Nacional 20 de Noviembre-ISSSTE, Mexico City, Mexico.ORCID http://orcid.org/0000-0001-9144-9193
Juana Salazar-SalinasCentral Epidemiological Surveillance Laboratory-ISSSTE, Mexico City, Mexico.ORCID http://orcid.org/0009-0002-8400-1977
Omar Fernando Mendoza-VázquezCentral Epidemiological Surveillance Laboratory-ISSSTE, Mexico City, Mexico.ORCID http://orcid.org/0009-0009-0814-4440
Gabriel Damazo-HernándezCentral Epidemiological Surveillance Laboratory-ISSSTE, Mexico City, Mexico.ORCID http://orcid.org/0009-0006-3355-1687
Josefina León-FélixLaboratory of Molecular Biology and Functional Genomics, Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD), Culiacán, Sinaloa, Mexico. ljosefina@ciad.mx.ORCID http://orcid.org/0000-0003-3755-881X

Funding

Ciencia y Tecnología ISSSTE E05
6 · The paper itself

Abstract

Pseudomonas aeruginosa (PA) is an important opportunistic pathogen that causes different infections on immunocompromised patients. Within PA accessory genome, differences in virulence, antibiotic resistance and biofilm formation have been described between strains, leading to the emergence of multidrug-resistant strains. The genome sequences of 17 strains isolated from patients with healthcare-associated infections in a Mexican hospital were genomically and phylogenetically analyzed and antibiotic resistance genes, virulence genes, and biofilm formation genes were detected. Fifteen of the 17 strains were resistant to at least two of the carbapenems meropenem, imipenem, and the monobactam aztreonam. The antibiotic resistance (mexA, mexB, and oprM) and the biofilm formation (pslA and pslD) genes were detected in all strains. Differences were found between strains in accessory genome size. The strains had different sequence types, and seven strains had sequence types associated with global high risk epidemic PA clones. All strains were represented in two groups among PA global strains. In the 17 strains, horizontally acquired resistance genes to aminoglycosides and beta-lactams were found, mainly, and between 230 and 240 genes that encode virulence factors. The strains under study were variable in terms of their accessory genome, antibiotic resistance, and virulence genes. With these characteristics, we provide information about the genomic diversity of clinically relevant PA strains.

Indexed as

CarbapenemsPseudomonas InfectionsAnti-Bacterial AgentsAztreonamDelivery of Health CareGenomicsHospitalsHumansMicrobial Sensitivity TestsPseudomonas aeruginosaAnti-Bacterial AgentsAztreonamCarbapenemsMultidrug resistantNosocomial infectionsPangenomePseudomonas aeruginosa

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.