Evidence map›Paper›PMID 38471600›Full record

ReviewMethods (San Diego, Calif.)2024

Using synthetic genome readers/regulators to interrogate chromatin processes: A brief review.

Steven J Philips, Adithi Danda, Aseem Z Ansari

Open access · greenAbstract readReview
In one paragraph

Review in Methods (San Diego, Calif.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Steven J PhilipsDepartment of Chemical Biology & Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Adithi DandaDepartment of Chemical Biology & Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Aseem Z AnsariDepartment of Chemical Biology & Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA. Electronic address: aseem.ansari@stjude.org.
St. Jude Children's Research Hospital · US

Funding

Synthetic molecules to stimulate the expression of Frataxin to ameliorate Freidreichs AtaxinR01NS108376 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI ASEEM Z ANSARI · 2018 to 2026
$3.6M
National Science Foundation CEE 2017079NIGMS NIH HHS GM108376NINDS NIH HHS R01 NS108376
6 · The paper itself

Abstract

Aberrant gene expression underlies numerous human ailments. Hence, developing small molecules to target and remedy dysfunctional gene regulation has been a long-standing goal at the interface of chemistry and medicine. A major challenge for designing small molecule therapeutics aimed at targeting desired genomic loci is the minimization of widescale disruption of genomic functions. To address this challenge, we rationally design polyamide-based multi-functional molecules, i.e., Synthetic Genome Readers/Regulators (SynGRs), which, by design, target distinct sequences in the genome. Herein, we briefly review how SynGRs access chromatin-bound and chromatin-free genomic sites, then highlight the methods for the study of chromatin processes using SynGRs on positioned nucleosomes in vitro or disease-causing repressive genomic loci in vivo.

Indexed as

ChromatinNucleosomesAnimalsChromatin Assembly and DisassemblyGene Expression RegulationGenomicsHumansNylonsChromatinNucleosomesNylonsCOSMICCSIDiSELGenome-targetingNucleosomePolyamideSELSynGRSynthetic transcription factorsTranscription

Identifiers

PMID38471600
PMCPMC11055675
OpenAlexW4392650143

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.