Evidence map›Paper›PMID 38470934›Full record

ArticlePLoS biology2024

Noncanonical and reversible cysteine ubiquitination prevents the overubiquitination of PEX5 at the peroxisomal membrane.

Tânia Francisco, Ana G Pedrosa, Tony A Rodrigues, Tarad Abalkhail, Hongli Li, Maria J Ferreira, Gerbrand J van der Heden van Noort, Marc Fransen, Ewald H Hettema, Jorge E Azevedo

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Tânia FranciscoInstituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal.
Ana G PedrosaInstituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal.
Tony A RodriguesInstituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal.
Tarad AbalkhailSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom.
Hongli LiLaboratory of Peroxisome Biology and Intracellular Communication, Department of Cellular and Molecular Medicine, Katholieke Universiteit Leuven, Leuven, Belgium.
Maria J FerreiraInstituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal.
Gerbrand J van der Heden van NoortDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, the Netherlands.
Marc FransenLaboratory of Peroxisome Biology and Intracellular Communication, Department of Cellular and Molecular Medicine, Katholieke Universiteit Leuven, Leuven, Belgium.
Ewald H HettemaSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom.
Jorge E AzevedoInstituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal.
i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto · PTKU Leuven · BEUniversidade do Porto · PTUniversity of Sheffield · GBLeiden University Medical Center · NL

Funding

COMPETE 2020-Operational Programme for Competitiveness and Internationalization (POCI)Fundação para a Ciência e a Tecnologia
6 · The paper itself

Abstract

PEX5, the peroxisomal protein shuttling receptor, binds newly synthesized proteins in the cytosol and transports them to the organelle. During its stay at the peroxisomal protein translocon, PEX5 is monoubiquitinated at its cysteine 11 residue, a mandatory modification for its subsequent ATP-dependent extraction back into the cytosol. The reason why a cysteine and not a lysine residue is the ubiquitin acceptor is unknown. Using an established rat liver-based cell-free in vitro system, we found that, in contrast to wild-type PEX5, a PEX5 protein possessing a lysine at position 11 is polyubiquitinated at the peroxisomal membrane, a modification that negatively interferes with the extraction process. Wild-type PEX5 cannot retain a polyubiquitin chain because ubiquitination at cysteine 11 is a reversible reaction, with the E2-mediated deubiquitination step presenting faster kinetics than PEX5 polyubiquitination. We propose that the reversible nonconventional ubiquitination of PEX5 ensures that neither the peroxisomal protein translocon becomes obstructed with polyubiquitinated PEX5 nor is PEX5 targeted for proteasomal degradation.

Indexed as

CysteineLysineAnimalsCarrier ProteinsPeroxisome-Targeting Signal 1 ReceptorProtein TransportRatsUbiquitinationCarrier ProteinsCysteineLysinePeroxisome-Targeting Signal 1 ReceptorPex5 protein, rat

Identifiers

PMID38470934
PMCPMC10959387
OpenAlexW4392716715

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.