Evidence map›Paper›PMID 38470545›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2024

Cell-free DNA Concentration as a Biomarker of Response and Recurrence in HER2-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy.

Mark Jesus M Magbanua, Ziad Ahmed, Rosalyn W Sayaman, Lamorna Brown Swigart, Gillian L Hirst, Christina Yau, Denise M Wolf, Wen Li, Amy L Delson, Jane Perlmutter and 8 more

Open access · greenAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Mark Jesus M MagbanuaDepartment of Laboratory Medicine, University of California San Francisco, San Francisco, California.ORCID 0000-0003-2113-3593
Ziad AhmedDepartment of Laboratory Medicine, University of California San Francisco, San Francisco, California.ORCID 0000-0003-1379-5124
Rosalyn W SayamanDepartment of Laboratory Medicine, University of California San Francisco, San Francisco, California.ORCID 0000-0003-1343-0619
Lamorna Brown SwigartDepartment of Laboratory Medicine, University of California San Francisco, San Francisco, California.ORCID 0000-0003-2076-5177
Gillian L HirstDepartment of Surgery, University of California San Francisco, San Francisco, California.ORCID 0000-0002-4502-0035
Christina YauDepartment of Surgery, University of California San Francisco, San Francisco, California.ORCID 0000-0002-1937-0859
Denise M WolfDepartment of Laboratory Medicine, University of California San Francisco, San Francisco, California.ORCID 0000-0002-3676-653X
Wen LiDepartment of Radiology, University of California San Francisco, San Francisco, California.ORCID 0000-0001-6584-363X
Amy L DelsonBreast Science Advocacy Core, University of California San Francisco, San Francisco, California.ORCID 0000-0002-2837-3218
Jane PerlmutterBreast Science Advocacy Core, University of California San Francisco, San Francisco, California.ORCID 0000-0001-5008-0406
Paula PohlmannDepartment of Breast Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0001-7914-5162
W Fraser SymmansDepartment of Pathology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-1526-184X
Douglas YeeDivision of Hematology, Oncology, and Transplantation, University of Minnesota, Minneapolis, Minnesota.ORCID 0000-0002-3387-4009
Nola M HyltonDepartment of Radiology, University of California San Francisco, San Francisco, California.ORCID 0000-0002-6747-1662
Laura J EssermanDepartment of Surgery, University of California San Francisco, San Francisco, California.ORCID 0000-0001-9202-4568
Angela M DeMicheleDivision of Hematology/Oncology, University of Pennsylvania, Philadelphia, Pennsylvania.ORCID 0000-0003-1297-4251
Hope S RugoDivision of Hematology/Oncology, University of California San Francisco, San Francisco, California.ORCID 0000-0001-6710-4814
Laura J van 't VeerDepartment of Laboratory Medicine, University of California San Francisco, San Francisco, California.ORCID 0000-0002-9838-8298
University of California, San Francisco · USThe University of Texas MD Anderson Cancer Center · USUniversity of Minnesota · USUniversity of Pennsylvania · US

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Kate Taylor Shumate · 1999 to 2026
$209.7M
The I SPY 2.2 TRIAL: Evolving to Imaging and Molecular Biomarker Response Directed Adaptive Sequential Treatment to Optimize Breast Cancer OutcomesP01CA210961 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LAURA J ESSERMAN · 2017 to 2026
$22.9M
TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3M
Training SubprojectU54HG007990 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H, PATTERSON, DAVID · 2014 to 2018
$14.8M
Using Networks to Seed Hierarchical Whole-cell Models of CancerU54CA209891 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI IDEKER, TREY, KROGAN, NEVAN J · 2017 to 2021
$10.9M
Strategy for combining circulating tumor DNA (ctDNA) and magnetic resonance imaging (MRI) measures of tumor burden for prediction of response and outcome in neoadjuvant-treated early breast cancerR01CA255442 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LI, WEN, MAGBANUA, MARK JESUS · 2021 to 2025
$3.3M
A systems biology approach to elucidate the biology of immune-associated outcomes in breast cancerK01CA279498 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Rosalyn Wong Sayaman · 2023 to 2026
$696k
National Cancer Institute (NCI) 28XS197 P-0518835National Cancer Institute (NCI) PO1-CA210961National Cancer Institute (NCI) R01CA255442NCI NIH HHS K01 CA279498NCI NIH HHS P01 CA210961NCI NIH HHS P30 CA082103NCI NIH HHS R01 CA255442NCI NIH HHS U54 CA209891NHGRI NIH HHS U54 HG007990NIGMS NIH HHS P41 GM103504
6 · The paper itself

Abstract

purposeWe previously demonstrated the clinical significance of circulating tumor DNA (ctDNA) in patients with HER2-negative breast cancer receiving neoadjuvant chemotherapy (NAC). Here, we compared its predictive and prognostic value with cell-free DNA (cfDNA) concentration measured in the same samples from the same patients. EXPERIMENTAL

design145 patients with hormone receptor (HR)-positive/HER2-negative and 138 triple-negative breast cancer (TNBC) with ctDNA data from a previous study were included in the analysis. Associations of serial cfDNA concentration with residual cancer burden (RCB) and distant recurrence-free survival (DRFS) were examined.

resultsIn TNBC, we observed a modest negative correlation between cfDNA concentration 3 weeks after treatment initiation and RCB, but none of the other timepoints showed significant correlation. In contrast, ctDNA was significantly positively correlated with RCB at all timepoints (all R > 0.3 and P < 0.05). In the HR-positive/HER2-negative group, cfDNA concentration did not associate with response to NAC, but survival analysis showed that high cfDNA shedders at pretreatment had a significantly worse DRFS than low shedders (hazard ratio, 2.12; P = 0.037). In TNBC, the difference in survival between high versus low cfDNA shedders at all timepoints was not statistically significant. In contrast, as previously reported, ctDNA at all timepoints was significantly correlated with DRFS in both subtypes.

conclusionsIn TNBC, cfDNA concentrations during therapy were not strongly correlated with response or prognosis. In the HR-positive/HER2-negative group, pretreatment cfDNA concentration was prognostic for DRFS. Overall, the predictive and prognostic value of cfDNA concentration was more limited than that of ctDNA.

Indexed as

Biomarkers, TumorBreast NeoplasmsCell-Free Nucleic AcidsNeoadjuvant TherapyNeoplasm Recurrence, LocalAdultAgedAntineoplastic Combined Chemotherapy ProtocolsCirculating Tumor DNAErb-b2 Receptor Tyrosine KinasesFemaleHumansMiddle AgedPrognosisTreatment OutcomeTriple Negative Breast NeoplasmsBiomarkers, TumorCell-Free Nucleic AcidsCirculating Tumor DNAERBB2 protein, humanErb-b2 Receptor Tyrosine Kinases

Identifiers

PMID38470545
PMCPMC11147708
OpenAlexW4392688088

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.