Evidence map›Paper›PMID 38470291›Full record

ArticleCytoskeleton (Hoboken, N.J.)2024

Sarcomeric tropomyosin expression during human iPSC differentiation into cardiomyocytes.

Dipak K Dube, Syamalima Dube, Huaiyu Shi, Patricia Benz, Samender Randhawa, Yingli Fan, Jusuo Wang, Zhen Ma, Joseph W Sanger, Jean M Sanger and 1 more

Open access · greenAbstract read
In one paragraph

Article in Cytoskeleton (Hoboken, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Dipak K DubeDepartment of Medicine, SUNY Upstate Medical University, Syracuse, New York, USA.ORCID https://orcid.org/0000-0002-0205-4761
Syamalima DubeDepartment of Medicine, SUNY Upstate Medical University, Syracuse, New York, USA.
Huaiyu ShiDepartment of Biomedical and Chemical Engineering, Syracuse University, Syracuse, New York, USA.
Patricia BenzDepartment of Medicine, SUNY Upstate Medical University, Syracuse, New York, USA.
Samender RandhawaDepartment of Medicine, SUNY Upstate Medical University, Syracuse, New York, USA.
Yingli FanDepartment of Cell and Developmental Biology, SUNY Upstate Medical University, Syracuse, New York, USA.
Jusuo WangDepartment of Cell and Developmental Biology, SUNY Upstate Medical University, Syracuse, New York, USA.
Zhen MaDepartment of Biomedical and Chemical Engineering, Syracuse University, Syracuse, New York, USA.
Joseph W SangerDepartment of Cell and Developmental Biology, SUNY Upstate Medical University, Syracuse, New York, USA.ORCID https://orcid.org/0000-0002-2281-8490
Jean M SangerDepartment of Cell and Developmental Biology, SUNY Upstate Medical University, Syracuse, New York, USA.
Bernard J PoieszDepartment of Medicine, SUNY Upstate Medical University, Syracuse, New York, USA.
SUNY Upstate Medical University · USSyracuse University · US

Funding

Analysis of Z-band assembly and maintenance in living skeletal muscle cellsR01AR057063 · NIAMS · UPSTATE MEDICAL UNIVERSITY · PI SANGER, JEAN M, SANGER, JOSEPH WILLIAM · 2009 to 2013
$1.7M
Barbara Kopp Cancer Research FundHendricks Fund, SUNY Upstate Medical UniversityNIAMS grant R01 AR-57063NIAMS NIH HHS R01 AR057063NSF CMMI-2130192SUNY Upstate Medical University Cancer Center Fund
6 · The paper itself

Abstract

Tropomyosin (TPM) is an essential sarcomeric component, stabilizing the thin filament and facilitating actin's interaction with myosin. In mammals, including humans, there are four TPM genes (TPM1, TPM2, TPM3, and TPM4) each of which generates a multitude of TPM isoforms via alternative splicing and using different promoters. In this study, we have examined the expression of transcripts as well as proteins of various sarcomeric TPM isoforms during human inducible pluripotent stem cell differentiation into cardiomyocytes. During the differentiation time course, we harvested cells on Days 0, 5, 10, 15, and 20 to analyze for various sarcomeric TPM transcripts by qRT-PCR and for sarcomeric TPM proteins using two-dimensional Western blot with sarcomeric TPM-specific CH1 monoclonal antibody followed by mass spectra analyses. Our results show increasing levels of total TPM transcripts and proteins during the period of differentiation, but varying levels of specific TPM isoforms during the same period. By Day 20, the rank order of TPM transcripts was TPM1α > TPM1κ > TPM2α > TPM1μ > TPM3α > TPM4α. TPM1α was the dominant protein produced with some TPM2 and much less TPM1κ and μ. Interestingly, small amounts of two lower molecular weight TPM3 isoforms were detected on Day 15. To the best of our knowledge this is the first demonstration of TPM1μ non-muscle isoform protein expression before and during cardiac differentiation.

Indexed as

Cell DifferentiationInduced Pluripotent Stem CellsMyocytes, CardiacSarcomeresTropomyosinHumansProtein IsoformsProtein IsoformsTropomyosinhiPSC‐derived cardiomyocytesLC‐MS/MSqRT‐PCRTPM1αTPM1μ

Identifiers

PMID38470291
PMCPMC11566289
OpenAlexW4392702909

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.