Evidence map›Paper›PMID 38469716›Full record

ArticleRNA biology2024

The role of the 5' sensing function of ribonuclease E in cyanobacteria.

Ute A Hoffmann, Elisabeth Lichtenberg, Said N Rogh, Raphael Bilger, Viktoria Reimann, Florian Heyl, Rolf Backofen, Claudia Steglich, Wolfgang R Hess, Annegret Wilde

Open access · goldAbstract read
In one paragraph

Article in RNA biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 2 countries.

Ute A HoffmannMolecular Genetics of Prokaryotes, Institute of Biology III, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-9658-2695
Elisabeth LichtenbergMolecular Genetics of Prokaryotes, Institute of Biology III, University of Freiburg, Freiburg, Germany.
Said N RoghMolecular Genetics of Prokaryotes, Institute of Biology III, University of Freiburg, Freiburg, Germany.
Raphael BilgerGenetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-4344-4571
Viktoria ReimannGenetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-9643-4553
Florian HeylBioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-3651-5685
Rolf BackofenBioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany.ORCID 0000-0001-8231-3323
Claudia SteglichGenetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-4708-6273
Wolfgang R HessGenetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-5340-3423
Annegret WildeMolecular Genetics of Prokaryotes, Institute of Biology III, University of Freiburg, Freiburg, Germany.ORCID 0000-0003-0935-8415
University of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA degradation is critical for synchronising gene expression with changing conditions in prokaryotic and eukaryotic organisms. In bacteria, the preference of the central ribonucleases RNase E, RNase J and RNase Y for 5'-monophosphorylated RNAs is considered important for RNA degradation. For RNase E, the underlying mechanism is termed 5' sensing, contrasting to the alternative 'direct entry' mode, which is independent of monophosphorylated 5' ends. Cyanobacteria, such as

Indexed as

EndoribonucleasesSynechocystisEscherichia coliRibonucleasesRNARNA, TransferEndoribonucleasesribonuclease ERibonucleasesRNARNA, Transfer5’ sensingcyanobacteriaRNA degradationRNase ERNA-seqSynechocystistRNA maturation

Identifiers

PMID38469716
PMCPMC10939160
OpenAlexW4392709523

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.