Evidence map›Paper›PMID 38467646›Full record

ArticleNature communications2024

Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features.

Craig A Magaret, Li Li, Allan C deCamp, Morgane Rolland, Michal Juraska, Brian D Williamson, James Ludwig, Cindy Molitor, David Benkeser, Alex Luedtke and 40 more

Registry-linked trialAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04505722 (A Randomized, Double-blind, Placebo-controlled Phase 3 Study to Assess the Efficacy and Safety of Ad26.COV2.S for the Prevention of SARS-CoV-2-mediated COVID-19 in Adults Aged 18 Years and Older), which is not on this map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04505722 phase3completednot on this map

A Randomized, Double-blind, Placebo-controlled Phase 3 Study to Assess the Efficacy and Safety of Ad26.COV2.S for the Prevention of SARS-CoV-2-mediated COVID-19 in Adults Aged 18 Years and Older

TypeinterventionalSponsorJanssen Vaccines & Prevention B.V.Ran2020 to 2023Enrolled44,325ConditionsParticipants With or Without Stable Co-morbidities Associated With Progression to Severe COVID-19 at Different Stages of the ProtocolArmsAd26.COV2.S, Placebo
3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The multiverse of CD46 and oncologic interactions.The Journal of clinical investigation · 2025
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

50 authors.

Craig A MagaretVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-5056-2664
Li LiVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-7112-9309
Allan C deCampVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0003-1404-4322
Morgane RollandUS Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, USA.ORCID 0000-0003-3650-8490
Michal JuraskaVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-0920-2915
Brian D WilliamsonVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-7024-548X
James LudwigVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0003-3500-3490
Cindy MolitorVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
David BenkeserDepartments of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, GA, USA.ORCID 0000-0002-1019-8343
Alex LuedtkeDepartment of Statistics, University of Washington, Seattle, WA, USA.
Brian SimpkinsDepartment of Computer Science, Pitzer College, Claremont, CA, USA.ORCID 0009-0002-1044-0053
Fei HengUniversity of North Florida, Jacksonville, FL, USA.ORCID 0000-0002-6701-7873
Yanqing SunUniversity of North Carolina at Charlotte, Charlotte, NC, USA.ORCID 0000-0002-3140-4572
Lindsay N CarppVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0003-0333-5925
Hongjun BaiUS Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, USA.ORCID 0000-0002-3501-3974
Bethany L DearloveUS Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, USA.ORCID 0000-0003-3653-4592
Elena E GiorgiVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Mandy JongeneelenJohnson & Johnson Innovative Medicine, Janssen Vaccines & Prevention B.V, Leiden, The Netherlands.
Boerries BrandenburgJohnson & Johnson Innovative Medicine, Janssen Vaccines & Prevention B.V, Leiden, The Netherlands.
Matthew McCallumDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-8398-8330
John E BowenDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
David VeeslerDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-6019-8675
Jerald SadoffJohnson & Johnson Innovative Medicine, Janssen Vaccines & Prevention B.V, Leiden, The Netherlands.ORCID 0000-0002-4839-3013
Glenda E GrayPerinatal HIV Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Sanne RoelsJanssen R&D, a division of Janssen Pharmaceutica NV, Beerse, Belgium.
An VandeboschJanssen R&D, a division of Janssen Pharmaceutica NV, Beerse, Belgium.
Daniel J StiehJohnson & Johnson Innovative Medicine, Janssen Vaccines & Prevention B.V, Leiden, The Netherlands.ORCID 0009-0003-8523-1528
Mathieu Le GarsJohnson & Johnson Innovative Medicine, Janssen Vaccines & Prevention B.V, Leiden, The Netherlands.
Johan VingerhoetsJanssen R&D, a division of Janssen Pharmaceutica NV, Beerse, Belgium.ORCID 0000-0001-5939-9501
Beatriz GrinsztejnEvandro Chagas National Institute of Infectious Diseases-Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil.
Paul A GoepfertDivision of Infectious Diseases, Department of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.ORCID 0000-0001-8441-5737
Leonardo Paiva de SousaEvandro Chagas National Institute of Infectious Diseases-Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil.ORCID 0000-0001-9004-5154
Mayara Secco Torres SilvaEvandro Chagas National Institute of Infectious Diseases-Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil.
Martin CasapiaFacultad de Medicina Humana, Universidad Nacional de la Amazonia Peru, Iquitos, Peru.ORCID 0000-0002-5972-0948
Marcelo H LossoHospital General de Agudos José María Ramos Mejia, Buenos Aires, Argentina.ORCID 0000-0002-4273-4833
Susan J LittleDivision of Infectious Diseases, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-7645-9737
Aditya GaurDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.
Linda-Gail BekkerThe Desmond Tutu HIV Centre, University of Cape Town, Observatory, Cape Town, South Africa.ORCID 0000-0002-0755-4386
Nigel GarrettCentre for the AIDS Programme of Research in South Africa, University of KwaZulu-Natal, Durban, South Africa.ORCID 0000-0002-4530-234X
Carla TruyersJanssen R&D, a division of Janssen Pharmaceutica NV, Beerse, Belgium.
Ilse Van DrommeJanssen R&D, a division of Janssen Pharmaceutica NV, Beerse, Belgium.
Edith SwannVaccine Research Program, Division of AIDS, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Mary A MarovichVaccine Research Program, Division of AIDS, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Dean FollmannBiostatistics Research Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0003-4073-0393
Kathleen M NeuzilCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, MD, USA.ORCID 0000-0001-9480-2714
Lawrence CoreyVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-2179-2436
Alexander L GreningerVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-7443-0527
Pavitra RoychoudhuryVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-4567-8232
Ollivier HyrienVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Peter B GilbertVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA. pgilbert@fredhutch.org.ORCID 0000-0002-2662-9427

Funding

LOC: HIV Vaccine Trials NetworkUM1AI068614 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Dan H. Barouch, Lawrence Corey · 2011 to 2026
$1175.6M
SDMC: HIV Vaccine Trials NetworkUM1AI068635 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Peter B. Gilbert, Yunda Huang · 2011 to 2026
$385.9M
The FIOCRUZ Therapeutic and Prevention HIV/AIDS Clinical Trials Unit (FioTrials)UM1AI069476 · NIAID · FUNDACAO OSWALDO CRUZ · PI BEATRIZ GRINSZTEJN · 2012 to 2026
$26.3M
Centers for Research on Structural Biology of Infectious Diseases: Universal Influenza Vaccine Research75N93022C00036 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI STAKER, BART · 2022 to 2025
$21.7M
Structure-based design of broadly protective coronavirus vaccinesP01AI167966 · NIAID · UNIVERSITY OF WASHINGTON · PI Francois J Villinger · 2022 to 2026
$15.3M
Statistical Methods in HIV Vaccine Efficacy TrialsR37AI054165 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Peter B. Gilbert · 2010 to 2026
$6.7M
Unraveling the bat humoral immune response against zoonotic viruses to guide the design of next-generation therapeuticsDP1AI158186 · NIAID · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2020 to 2024
$5.4M
High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0M
NIAID NIH HHS 75N93022C00036NIAID NIH HHS DP1 AI158186NIAID NIH HHS P01 AI167966NIAID NIH HHS R37 AI054165NIAID NIH HHS UM1 AI068614NIAID NIH HHS UM1 AI068635NIAID NIH HHS UM1 AI069476NIH HHS S10 OD028685
6 · The paper itself

Abstract

In the ENSEMBLE randomized, placebo-controlled phase 3 trial (NCT04505722), estimated single-dose Ad26.COV2.S vaccine efficacy (VE) was 56% against moderate to severe-critical COVID-19. SARS-CoV-2 Spike sequences were determined from 484 vaccine and 1,067 placebo recipients who acquired COVID-19. In this set of prespecified analyses, we show that in Latin America, VE was significantly lower against Lambda vs. Reference and against Lambda vs. non-Lambda [family-wise error rate (FWER) p < 0.05]. VE differed by residue match vs. mismatch to the vaccine-insert at 16 amino acid positions (4 FWER p < 0.05; 12 q-value ≤ 0.20); significantly decreased with physicochemical-weighted Hamming distance to the vaccine-strain sequence for Spike, receptor-binding domain, N-terminal domain, and S1 (FWER p < 0.001); differed (FWER ≤ 0.05) by distance to the vaccine strain measured by 9 antibody-epitope escape scores and 4 NTD neutralization-impacting features; and decreased (p = 0.011) with neutralization resistance level to vaccinee sera. VE against severe-critical COVID-19 was stable across most sequence features but lower against the most distant viruses.

Indexed as

Ad26COVS1COVID-19Amino AcidsAntibodies, NeutralizingAntibodies, ViralHumansSARS-CoV-2Vaccine EfficacyAd26COVS1Amino AcidsAntibodies, NeutralizingAntibodies, Viral

Identifiers

PMID38467646
PMCPMC10928100

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.