Evidence map›Paper›PMID 38467613›Full record

ArticleNature communications2024

dCas13-mediated translational repression for accurate gene silencing in mammalian cells.

Antonios Apostolopoulos, Naohiro Kawamoto, Siu Yu A Chow, Hitomi Tsuiji, Yoshiho Ikeuchi, Yuichi Shichino, Shintaro Iwasaki

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. RNA therapeutics: current status and future directions.Signal transduction and targeted therapy · 2026
    Review
  3. Review
  4. Cap-Independent Translation Regulation of VEGF Using CRISPR-dCas13d.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Versatile CRISPR-Cas Tools for Gene Regulation in Zebrafish via an Enhanced Q Binary System.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Antonios ApostolopoulosDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, 277-8561, Japan.ORCID 0000-0002-9073-2269
Naohiro KawamotoRNA Systems Biochemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama, 351-0198, Japan.ORCID 0000-0003-4252-0963
Siu Yu A ChowInstitute of Industrial Science, The University of Tokyo, Meguro-ku, Tokyo, 153-8505, Japan.
Hitomi TsuijiEducation and Research Division of Pharmacy, School of Pharmacy, Aichi Gakuin University, Nagoya, Aichi, 464-8650, Japan.
Yoshiho IkeuchiInstitute of Industrial Science, The University of Tokyo, Meguro-ku, Tokyo, 153-8505, Japan.ORCID 0000-0002-2829-3840
Yuichi ShichinoRNA Systems Biochemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama, 351-0198, Japan. yuichi.shichino@riken.jp.ORCID 0000-0002-0093-1185
Shintaro IwasakiDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, 277-8561, Japan. shintaro.iwasaki@riken.jp.ORCID 0000-0001-7724-3754
Pioneer (United States) · USRIKEN · JPThe University of Tokyo · JPAichi Gakuin University · JP

Funding

Japan Agency for Medical Research and Development (AMED) JP20gm1410001Japan Agency for Medical Research and Development (AMED) JP23gm6910005Japan Agency for Medical Research and Development (AMED) JP23gm6910005h0001MEXT | Japan Society for the Promotion of Science (JSPS) JP20K07016MEXT | Japan Society for the Promotion of Science (JSPS) JP21K15023MEXT | Japan Society for the Promotion of Science (JSPS) JP23H02415MEXT | Japan Society for the Promotion of Science (JSPS) JP23K05648MEXT | Japan Society for the Promotion of Science (JSPS) JP23KJ2175MEXT | RIKEN Pioneering ProjectsMinistry of Education, Culture, Sports, Science and Technology (MEXT) JP20H05784Ministry of Education, Culture, Sports, Science and Technology (MEXT) JP20H05786Ministry of Education, Culture, Sports, Science and Technology (MEXT) JP21H05278Ministry of Education, Culture, Sports, Science and Technology (MEXT) JP21H05734Ministry of Education, Culture, Sports, Science and Technology (MEXT) JP23H04268
6 · The paper itself

Abstract

Current gene silencing tools based on RNA interference (RNAi) or, more recently, clustered regularly interspaced short palindromic repeats (CRISPR)‒Cas13 systems have critical drawbacks, such as off-target effects (RNAi) or collateral mRNA cleavage (CRISPR‒Cas13). Thus, a more specific method of gene knockdown is needed. Here, we develop CRISPRδ, an approach for translational silencing, harnessing catalytically inactive Cas13 proteins (dCas13). Owing to its tight association with mRNA, dCas13 serves as a physical roadblock for scanning ribosomes during translation initiation and does not affect mRNA stability. Guide RNAs covering the start codon lead to the highest efficacy regardless of the translation initiation mechanism: cap-dependent, internal ribosome entry site (IRES)-dependent, or repeat-associated non-AUG (RAN) translation. Strikingly, genome-wide ribosome profiling reveals the ultrahigh gene silencing specificity of CRISPRδ. Moreover, the fusion of a translational repressor to dCas13 further improves the performance. Our method provides a framework for translational repression-based gene silencing in eukaryotes.

Indexed as

RibosomesRNA, Guide, CRISPR-Cas SystemsAnimalsCodon, InitiatorGene SilencingMammalsPeptide Chain Initiation, TranslationalProtein BiosynthesisRNA, MessengerCodon, InitiatorRNA, Guide, CRISPR-Cas SystemsRNA, Messenger

Identifiers

PMID38467613
PMCPMC10928199
OpenAlexW4392638696

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.