Evidence map›Paper›PMID 38466718›Full record

ArticlePLoS biology2024

Widespread prevalence of a methylation-dependent switch to activate an essential DNA damage response in bacteria.

Aditya Kamat, Ngat T Tran, Mohak Sharda, Neha Sontakke, Tung B K Le, Anjana Badrinarayanan

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Aditya KamatNational Centre for Biological Sciences (TIFR), Bengaluru, India.
Ngat T TranJohn Innes Centre, Department of Molecular Microbiology, Colney Lane, Norwich, United Kingdom.
Mohak ShardaNational Centre for Biological Sciences (TIFR), Bengaluru, India.
Neha SontakkeNational Centre for Biological Sciences (TIFR), Bengaluru, India.
Tung B K LeJohn Innes Centre, Department of Molecular Microbiology, Colney Lane, Norwich, United Kingdom.
Anjana BadrinarayananNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0001-5520-2134
National Centre for Biological Sciences · INJohn Innes Centre · GB

Funding

DBT-Wellcome Trust India Alliance IA/I/21/1/505630Wellcome Trust
6 · The paper itself

Abstract

DNA methylation plays central roles in diverse cellular processes, ranging from error-correction during replication to regulation of bacterial defense mechanisms. Nevertheless, certain aberrant methylation modifications can have lethal consequences. The mechanisms by which bacteria detect and respond to such damage remain incompletely understood. Here, we discover a highly conserved but previously uncharacterized transcription factor (Cada2), which orchestrates a methylation-dependent adaptive response in Caulobacter. This response operates independently of the SOS response, governs the expression of genes crucial for direct repair, and is essential for surviving methylation-induced damage. Our molecular investigation of Cada2 reveals a cysteine methylation-dependent posttranslational modification (PTM) and mode of action distinct from its Escherichia coli counterpart, a trait conserved across all bacteria harboring a Cada2-like homolog instead. Extending across the bacterial kingdom, our findings support the notion of divergence and coevolution of adaptive response transcription factors and their corresponding sequence-specific DNA motifs. Despite this diversity, the ubiquitous prevalence of adaptive response regulators underscores the significance of a transcriptional switch, mediated by methylation PTM, in driving a specific and essential bacterial DNA damage response.

Indexed as

BacteriaDNA MethylationBacterial ProteinsDNA, BacterialDNA DamageDNA RepairEscherichia coliPrevalenceProtein Processing, Post-TranslationalTranscription FactorsBacterial ProteinsDNA, BacterialTranscription Factors

Identifiers

PMID38466718
PMCPMC10957082
OpenAlexW4392643337

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.