Evidence map›Paper›PMID 38466627›Full record

ArticleeLife2024

Developmental conversion of thymocyte-attracting cells into self-antigen-displaying cells in embryonic thymus medulla epithelium.

Izumi Ohigashi, Andrea J White, Mei-Ting Yang, Sayumi Fujimori, Yu Tanaka, Alison Jacques, Hiroshi Kiyonari, Yosuke Matsushita, Sevilay Turan, Michael C Kelly and 2 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Runx3 instructs AireJournal of autoimmunity · 2026
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. T Cell Development: From T-Lineage Specification to Intrathymic Maturation.Advances in experimental medicine and biology · 2025
    Review
  11. Review
  12. Generation and repair of thymic epithelial cells.The Journal of experimental medicine · 2024
    Review
  13. Article
  14. Article
  15. Aire in Autoimmunity.Annual review of immunology · 2024
    Review
  16. Article
  17. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 4 countries.

Izumi OhigashiDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima, Japan.ORCID https://orcid.org/0000-0003-0017-6957
Andrea J WhiteInstitute for Immunology and Immunotherapy, University of Birmingham, Birmingham, United Kingdom.
Mei-Ting YangThymus Biology Section, Experimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, United States.
Sayumi FujimoriDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima, Japan.ORCID https://orcid.org/0000-0002-1822-1296
Yu TanakaThymus Biology Section, Experimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, United States.
Alison JacquesThymus Biology Section, Experimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, United States.
Hiroshi KiyonariLaboratory for Animal Resources and Genetic Engineering, RIKEN Center for Biosystems Dynamics Research, Hyogo, Japan.
Yosuke MatsushitaDivision of Genome Medicine, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima, Japan.
Sevilay TuranSequencing Facility, Frederick National Laboratory for Cancer Research, National Cancer Institute, Frederick, United States.
Michael C KellySingle Cell Analysis Facility, Cancer Research Technology Program, National Cancer Institute, National Institutes of Health, Bethesda, United States.ORCID https://orcid.org/0000-0003-0654-2778
Graham AndersonInstitute for Immunology and Immunotherapy, University of Birmingham, Birmingham, United Kingdom.
Yousuke TakahamaThymus Biology Section, Experimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, United States.ORCID https://orcid.org/0000-0002-4992-9174
National Institutes of Health · USTokushima University · JPInstitute of Immunology · HRFrederick National Laboratory for Cancer Research · USRIKEN Center for Biosystems Dynamics Research · JP

Funding

CCR Sequencing FacilityZICBC011331 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MALIK, MARIAM · 2010 to 2025
$68.2M
Science and Technology ResourcesZIKBC010857 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MALIK, MARIAM · 2009 to 2025
$51.4M
Thymus biologyZIABC011806 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI TAKAHAMA, YOUSUKE · 2018 to 2025
$13.5M
Single Cell Analysis FacilityZICBC012123 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KELLY, MICHAEL · 2022 to 2025
$7.3M
Intramural NIH HHS ZIA BC011806Medical Research Council MR/N000919/1Medical Research Council MR/T029765/1NIH HHS ZIA BC 011806Wellcome TrustWellcome Trust 211944/Z/18/Z
6 · The paper itself

Abstract

Thymus medulla epithelium establishes immune self-tolerance and comprises diverse cellular subsets. Functionally relevant medullary thymic epithelial cells (mTECs) include a self-antigen-displaying subset that exhibits genome-wide promiscuous gene expression promoted by the nuclear protein Aire and that resembles a mosaic of extrathymic cells including mucosal tuft cells. An additional mTEC subset produces the chemokine CCL21, thereby attracting positively selected thymocytes from the cortex to the medulla. Both self-antigen-displaying and thymocyte-attracting mTEC subsets are essential for self-tolerance. Here, we identify a developmental pathway by which mTECs gain their diversity in functionally distinct subsets. We show that CCL21-expressing mTECs arise early during thymus ontogeny in mice. Fate-mapping analysis reveals that self-antigen-displaying mTECs, including Aire-expressing mTECs and thymic tuft cells, are derived from CCL21-expressing cells. The differentiation capability of CCL21-expressing embryonic mTECs is verified in reaggregate thymus experiments. These results indicate that CCL21-expressing embryonic mTECs carry a developmental potential to give rise to self-antigen-displaying mTECs, revealing that the sequential conversion of thymocyte-attracting subset into self-antigen-displaying subset serves to assemble functional diversity in the thymus medulla epithelium.

Indexed as

ThymocytesTranscription FactorsAnimalsCell DifferentiationEpithelial CellsEpitheliumMiceMice, Inbred C57BLThymus GlandTranscription FactorsAireCCL21developmental pathwayimmunologyinflammationmedullary thymic epithelial cellmousethymus

Identifiers

PMID38466627
PMCPMC10928509
OpenAlexW4389305150

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.