Evidence map›Paper›PMID 38466360›Full record

ArticleInternational microbiology : the official journal of the Spanish Society for Microbiology2024

Genome-based taxonomic identification and safety assessment of an Enterococcus strain isolated from a homemade dairy product.

Young-Hoo Kim, Dong-Hoon Lee, Han Sol Seo, Su-Hyeon Eun, Do Sup Lee, Yong-Keun Choi, Sang Hyun Lee, Tae-Yoon Kim

Abstract read
PubMed Publisher
In one paragraph

Article in International microbiology : the official journal of the Spanish Society for Microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Young-Hoo KimDepartment of Biological Engineering, College of Engineering, Konkuk University, Seoul, 05029, South Korea.
Dong-Hoon LeeYunovia Co., Ltd, Hwaseong, 18449, South Korea.
Han Sol SeoYunovia Co., Ltd, Hwaseong, 18449, South Korea.
Su-Hyeon EunYunovia Co., Ltd, Hwaseong, 18449, South Korea.
Do Sup LeeYunovia Co., Ltd, Hwaseong, 18449, South Korea.
Yong-Keun ChoiR&D Team, Choi Lab Inc, Seoul, 01811, South Korea.
Sang Hyun LeeDepartment of Biological Engineering, College of Engineering, Konkuk University, Seoul, 05029, South Korea.
Tae-Yoon KimDepartment of Pharmacy, College of Pharmacy and Institute of Pharmaceutical Sciences, CHA University, Seongnam, 13488, Republic of Korea. imaeoon2114@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aim of this study was to explore the taxonomic identification and evaluate the safety of a bacterium, Enterococcus lactis IDCC 2105, isolated from homemade cheese in Korea, using whole genome sequence (WGS) analysis. It sought to identify the species level of this Enterococcus spp., assess its antibiotic resistance, and evaluate its virulence potential. WGS analysis confirmed the bacterial strain IDCC 2105 as E. lactis and identified genes responsible for resistance to erythromycin and clindamycin, specifically msrC, and eatAv, which are chromosomally located, indicating a minimal risk for horizontal gene transfer. The absence of plasmids in E. lactis IDCC 2105 further diminishes the likelihood of resistance gene dissemination. Additionally, our investigation into seven virulence factors, including hemolysis, platelet aggregation, biofilm formation, hyaluronidase, gelatinase, ammonia production, and β-glucuronidase activity, revealed no detectable virulence traits. Although bioinformatic analysis suggested the presence of collagen adhesion genes acm and scm, these were not corroborated by phenotypic virulence assays. Based on these findings, E. lactis IDCC 2105 presents as a safe strain for potential applications, contributing valuable information on its taxonomy, antibiotic resistance profile, and lack of virulence factors, supporting its use in food products.

Indexed as

Anti-Bacterial AgentsCheeseEnterococcusGenome, BacterialVirulence FactorsWhole Genome SequencingDairy ProductsDrug Resistance, BacterialFood MicrobiologyMicrobial Sensitivity TestsRepublic of KoreaVirulenceAnti-Bacterial AgentsVirulence FactorsEnterococcus lactisHomemade cheeseSafety assessmentTaxonomic identificationWhole genome sequence

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.