Evidence map›Paper›PMID 38466226›Full record

ArticleThe Plant cell2024

Evidence for an RNAi-independent role of Arabidopsis DICER-LIKE2 in growth inhibition and basal antiviral resistance.

Carsten Poul Skou Nielsen, Laura Arribas-Hernández, Lijuan Han, Marlene Reichel, Jakob Woessmann, Rune Daucke, Simon Bressendorff, Diego López-Márquez, Stig Uggerhøj Andersen, Nathan Pumplin and 2 more

Abstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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  3. Review
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Carsten Poul Skou NielsenCopenhagen Plant Science Center, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark.ORCID 0009-0000-9933-5975
Laura Arribas-HernándezCopenhagen Plant Science Center, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark.ORCID 0000-0003-0605-0407
Lijuan HanCopenhagen Plant Science Center, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark.ORCID 0000-0002-4699-6742
Marlene ReichelCopenhagen Plant Science Center, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark.ORCID 0000-0002-4036-8657
Jakob WoessmannDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Bygningstorvet, DK-2800 Lyngby, Denmark.ORCID 0000-0002-2283-7237
Rune DauckeDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Bygningstorvet, DK-2800 Lyngby, Denmark.ORCID 0009-0001-9059-2753
Simon BressendorffCopenhagen Plant Science Center, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark.ORCID 0000-0002-1093-2114
Diego López-MárquezCopenhagen Plant Science Center, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark.ORCID 0000-0002-5923-4392
Stig Uggerhøj AndersenDepartment of Molecular Biology and Genetics, Aarhus University, Universitetsbyen 81, DK-8000 Aarhus C, Denmark.ORCID 0000-0002-1096-1468
Nathan PumplinSwiss Federal Institute of Technology, Institute of Molecular Plant Biology, Universitätsstrasse 2, CH-8092 Zürich, Switzerland.ORCID 0000-0003-4492-5358
Erwin M SchoofDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Bygningstorvet, DK-2800 Lyngby, Denmark.ORCID 0000-0002-3117-7832
Peter BrodersenCopenhagen Plant Science Center, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark.ORCID 0000-0003-1083-1150

Funding

European Research CouncilIndependent Research Fund Denmark 12-133793Villum Fonden 13397
6 · The paper itself

Abstract

Flowering plant genomes encode four or five DICER-LIKE (DCL) enzymes that produce small interfering RNAs (siRNAs) and microRNAs, which function in RNA interference (RNAi). Different RNAi pathways in plants effect transposon silencing, antiviral defense, and endogenous gene regulation. DCL2 acts genetically redundantly with DCL4 to confer basal antiviral defense. However, DCL2 may also counteract DCL4 since knockout of DCL4 causes growth defects that are suppressed by DCL2 inactivation. Current models maintain that RNAi via DCL2-dependent siRNAs is the biochemical basis of both effects. Here, we report that DCL2-mediated antiviral resistance and growth defects cannot be explained by the silencing effects of DCL2-dependent siRNAs. Both functions are defective in genetic backgrounds that maintain high levels of DCL2-dependent siRNAs, either with specific point mutations in DCL2 or with reduced DCL2 dosage because of heterozygosity for dcl2 knockout alleles. Intriguingly, all DCL2 functions require its catalytic activity, and the penetrance of DCL2-dependent growth phenotypes in dcl4 mutants correlates with DCL2 protein levels but not with levels of major DCL2-dependent siRNAs. We discuss this requirement and correlation with catalytic activity but not with resulting siRNAs, in light of other findings that reveal a DCL2 function in innate immunity activation triggered by cytoplasmic double-stranded RNA.

Indexed as

ArabidopsisArabidopsis ProteinsRibonuclease IIIRNA InterferenceCell Cycle ProteinsDisease ResistanceGene Expression Regulation, PlantMutationPlant DiseasesRNA, Small InterferingArabidopsis ProteinsCell Cycle ProteinsDCL2 protein, ArabidopsisDCL4 protein, ArabidopsisRibonuclease IIIRNA, Small Interfering

Identifiers

PMID38466226
PMCPMC11132882

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.