Evidence map›Paper›PMID 38464559›Full record

ArticleMachine learning: science and technology2024

WATUNet: a deep neural network for segmentation of volumetric sweep imaging ultrasound.

Donya Khaledyan, Thomas J Marini, Avice O'Connell, Steven Meng, Jonah Kan, Galen Brennan, Yu Zhao, Timothy M Baran, Kevin J Parker

Abstract read
In one paragraph

Article in Machine learning: science and technology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Donya KhaledyanDepartment of Electrical and Computer Engineering, University of Rochester, Rochester, NY, United States of America.ORCID https://orcid.org/0009-0004-0430-8341
Thomas J MariniDepartment of Imaging Sciences, University of Rochester Medical Center, Rochester, NY, United States of America.
Avice O'ConnellDepartment of Imaging Sciences, University of Rochester Medical Center, Rochester, NY, United States of America.
Steven MengDepartment of Imaging Sciences, University of Rochester Medical Center, Rochester, NY, United States of America.
Jonah KanDepartment of Imaging Sciences, University of Rochester Medical Center, Rochester, NY, United States of America.
Galen BrennanDepartment of Imaging Sciences, University of Rochester Medical Center, Rochester, NY, United States of America.
Yu ZhaoDepartment of Imaging Sciences, University of Rochester Medical Center, Rochester, NY, United States of America.
Timothy M BaranDepartment of Imaging Sciences, University of Rochester Medical Center, Rochester, NY, United States of America.
Kevin J ParkerDepartment of Electrical and Computer Engineering, University of Rochester, Rochester, NY, United States of America.ORCID https://orcid.org/0000-0002-6313-6605

Funding

Advanced Brain OCT ElastographyR21AG070331 · NIA · UNIVERSITY OF ROCHESTER · PI PARKER, KEVIN J · 2020 to 2020
$422k
The H-scan approach to classifying ultrasound echoesR21EB025290 · NIBIB · UNIVERSITY OF ROCHESTER · PI PARKER, KEVIN J · 2018 to 2019
$420k
NIA NIH HHS R21 AG070331NIBIB NIH HHS R21 EB025290
6 · The paper itself

Abstract

Limited access to breast cancer diagnosis globally leads to delayed treatment. Ultrasound, an effective yet underutilized method, requires specialized training for sonographers, which hinders its widespread use. Volume sweep imaging (VSI) is an innovative approach that enables untrained operators to capture high-quality ultrasound images. Combined with deep learning, like convolutional neural networks, it can potentially transform breast cancer diagnosis, enhancing accuracy, saving time and costs, and improving patient outcomes. The widely used UNet architecture, known for medical image segmentation, has limitations, such as vanishing gradients and a lack of multi-scale feature extraction and selective region attention. In this study, we present a novel segmentation model known as Wavelet_Attention_UNet (WATUNet). In this model, we incorporate wavelet gates and attention gates between the encoder and decoder instead of a simple connection to overcome the limitations mentioned, thereby improving model performance. Two datasets are utilized for the analysis: the public 'Breast Ultrasound Images' dataset of 780 images and a private VSI dataset of 3818 images, captured at the University of Rochester by the authors. Both datasets contained segmented lesions categorized into three types: no mass, benign mass, and malignant mass. Our segmentation results show superior performance compared to other deep networks. The proposed algorithm attained a Dice coefficient of 0.94 and an F1 score of 0.94 on the VSI dataset and scored 0.93 and 0.94 on the public dataset, respectively. Moreover, our model significantly outperformed other models in McNemar's test with false discovery rate correction on a 381-image VSI set. The experimental findings demonstrate that the proposed WATUNet model achieves precise segmentation of breast lesions in both standard-of-care and VSI images, surpassing state-of-the-art models. Hence, the model holds considerable promise for assisting in lesion identification, an essential step in the clinical diagnosis of breast lesions.

Indexed as

breast ultrasoundUNetVSIWATUNet

Identifiers

PMID38464559
PMCPMC10921088

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.