Evidence map›Paper›PMID 38464259›Full record

ArticlebioRxiv : the preprint server for biology2024

Study of Impacts of Two Types of Cellular Aging on the Yeast Bud Morphogenesis.

Kevin Tsai, Zhen Zhou, Jiadong Yang, Zhiliang Xu, Shixin Xu, Roya Zandi, Nan Hao, Weitao Chen, Mark Alber

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Kevin TsaiDepartment of Mathematics, University of California, Riverside, CA, United States of America.
Zhen ZhouDepartment of Molecular Biology, School of Biological Sciences, University of California, San Diego, CA, United States of America.
Jiadong YangDepartment of Molecular, Cell and Systems Biology, University of California, Riverside, CA, United States of America.
Zhiliang XuApplied and Computational Mathematics and Statistics Department, University of Notre Dame, Notre Dame, IN, United States of America.
Shixin XuDuke Kunshan University, Kunshan, Jiangsu, China.
Roya ZandiInterdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, CA, United States of America.
Nan HaoDepartment of Molecular Biology, School of Biological Sciences, University of California, San Diego, CA, United States of America.
Weitao ChenDepartment of Mathematics, University of California, Riverside, CA, United States of America.ORCID 0000-0003-3362-5982
Mark AlberDepartment of Mathematics, University of California, Riverside, CA, United States of America.
University of California, Riverside · USUniversity of California San Diego · USDuke Kunshan University · CNUniversity of Notre Dame · US

Funding

Network-Driven Dynamics of Replicative AgingR01AG056440 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEFF M HASTY, Nan Hao · 2017 to 2026
$5.6M
Reprogramming cell-fate decisions through predictive modeling and synthetic biologyR01GM144595 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAO, NAN, HASTY, JEFF M · 2022 to 2025
$2.8M
Systems biology analysis of RNA-binding protein aggregation during cellular agingR01AG068112 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAO, NAN · 2021 to 2025
$2.3M
NIA NIH HHS R01 AG056440NIA NIH HHS R01 AG068112NIGMS NIH HHS R01 GM144595
6 · The paper itself

Abstract

Understanding the mechanisms of cellular aging processes is crucial for attempting to extend organismal lifespan and for studying age-related degenerative diseases. Yeast cells divide through budding, providing a classical biological model for studying cellular aging. With their powerful genetics, relatively short lifespan and well-established signaling pathways also found in animals, yeast cells offer valuable insights into the aging process. Recent experiments suggested the existence of two aging modes in yeast characterized by nucleolar and mitochondrial declines, respectively. In this study, by analyzing experimental data it was shown that cells evolving into those two aging modes behave differently when they are young. While buds grow linearly in both modes, cells that consistently generate spherical buds throughout their lifespan demonstrate greater efficacy in controlling bud size and growth rate at young ages. A three-dimensional chemical-mechanical model was developed and used to suggest and test hypothesized mechanisms of bud morphogenesis during aging. Experimentally calibrated simulations showed that tubular bud shape in one aging mode could be generated by locally inserting new materials at the bud tip guided by the polarized Cdc42 signal during the early stage of budding. Furthermore, the aspect ratio of the tubular bud could be stabilized during the late stage, as observed in experiments, through a reduction on the new cell surface material insertion or an expansion of the polarization site. Thus model simulations suggest the maintenance of new cell surface material insertion or chemical signal polarization could be weakened due to cellular aging in yeast and other cell types.

Indexed as

biochemical signalsBiophysics and Computational Biologycellular agingmechanical propertiesmultiscale computational modelpolarizationyeast budding

Identifiers

PMID38464259
PMCPMC10925247
OpenAlexW4392354697

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.