Evidence map›Paper›PMID 38463037›Full record

ArticlePNAS nexus2024

Quantitative description of the phase-separation behavior of the multivalent SLP65-CIN85 complex.

Joachim Maier, Daniel Sieme, Leo E Wong, Furqan Dar, Jürgen Wienands, Stefan Becker, Christian Griesinger

Open access · goldAbstract read
In one paragraph

Article in PNAS nexus, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Joachim MaierDepartment of NMR Based Structural Biology, Max Planck Institute (MPI) for Multidisciplinary Sciences, 37077 Göttingen, Germany.ORCID https://orcid.org/0000-0001-7101-7334
Daniel SiemeDepartment of NMR Based Structural Biology, Max Planck Institute (MPI) for Multidisciplinary Sciences, 37077 Göttingen, Germany.ORCID https://orcid.org/0000-0001-9000-9938
Leo E WongDepartment of NMR Based Structural Biology, Max Planck Institute (MPI) for Multidisciplinary Sciences, 37077 Göttingen, Germany.
Furqan DarDepartment of Biomedical Engineering, Washington University in St Louis, St Louis, MO 63130, USA.ORCID https://orcid.org/0000-0002-3765-8506
Jürgen WienandsInstitute of Cellular and Molecular Immunology, University Medical Center Göttingen, 37073 Göttingen, Germany.
Stefan BeckerDepartment of NMR Based Structural Biology, Max Planck Institute (MPI) for Multidisciplinary Sciences, 37077 Göttingen, Germany.ORCID https://orcid.org/0000-0003-2041-5740
Christian GriesingerDepartment of NMR Based Structural Biology, Max Planck Institute (MPI) for Multidisciplinary Sciences, 37077 Göttingen, Germany.ORCID https://orcid.org/0000-0002-1266-4344
Universitätsmedizin Göttingen · DEWashington University in St. Louis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biomolecular condensates play a major role in cell compartmentalization, besides membrane-enclosed organelles. The multivalent SLP65 and CIN85 proteins are proximal B-cell antigen receptor (BCR) signal effectors and critical for proper immune responses. In association with intracellular vesicles, the two effector proteins form phase separated condensates prior to antigen stimulation, thereby preparing B lymphocytes for rapid and effective activation upon BCR ligation. Within this tripartite system, 6 proline-rich motifs (PRMs) of SLP65 interact promiscuously with 3 SH3 domains of the CIN85 monomer, establishing 18 individual SH3-PRM interactions whose individual dissociation constants we determined. Based on these 18 dissociation constants, we measured the phase-separation properties of the natural SLP65/CIN85 system as well as designer constructs that emphasize the strongest SH3/PRM interactions. By modeling these various SLP65/CIN85 constructs with the program LASSI (LAttice simulation engine for Sticker and Spacer Interactions), we reproduced the observed phase-separation properties. In addition, LASSI revealed a deviation in the experimental measurement, which was independently identified as a previously unknown intramolecular interaction. Thus, thermodynamic properties of the individual PRM/SH3 interactions allow us to model the phase-separation behavior of the SLP65/CIN85 system faithfully.

Indexed as

biomolecular condensatesBLNKCIN85phase separationSLP65

Identifiers

PMID38463037
PMCPMC10923291
OpenAlexW4392604990

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.