Evidence map›Paper›PMID 38462577›Full record

ArticlePlant cell reports2024

Comparative genomics of N-acetyl-5-methoxytryptamine members in four Prunus species with insights into bud dormancy and abiotic stress responses in Prunus avium.

Muhammad Aamir Manzoor, Yan Xu, Zhengxin Lv, Jieming Xu, Yuxuan Wang, Wanxia Sun, Xunju Liu, Li Wang, Muhammad Abdullah, Ruie Liu and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Muhammad Aamir ManzoorDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China.ORCID http://orcid.org/0000-0002-4277-5483
Yan XuDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China.
Zhengxin LvDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China.
Jieming XuDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China.
Yuxuan WangDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China.
Wanxia SunDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China.
Xunju LiuDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China.
Li WangDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China.
Muhammad AbdullahQueensland Alliance of Agriculture and Food Innovation, The University of Queensland, Brisbane, 4072, Australia.
Ruie LiuDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China.
Songtao JiuDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China. jiusongtao@sjtu.edu.cn.
Caixi ZhangDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Minhang District Jianchuan Road No.601, Shanghai, 200240, People's Republic of China. acaizh@sjtu.edu.cn.
Shanghai Jiao Tong University · CNThe University of Queensland · AU

Funding

Shanghai Agriculture Applied Technology Development Program, China 2022-02-08-00-12-F01120
6 · The paper itself

Abstract

key messageThis study provides novel insights into the evolution, diversification, and functions of melatonin biosynthesis genes in Prunus species, highlighting their potential role in regulating bud dormancy and abiotic stresses. The biosynthesis of melatonin (MEL) in plants is primarily governed by enzymatic reactions involving key enzymes such as serotonin N-acetyltransferase (SNAT), tryptamine 5-hydroxylase (T5H), N-acetylserotonin methyltransferase (ASMT) and tryptophan decarboxylase (TDC). In this study, we analyzed Melatonin genes in four Prunus species such as Prunus avium (Pavi), Prunus pusilliflora (Ppus), Prunus serulata (Pser), and Prunus persica (Pper) based on comparative genomics approach. Among the four Prunus species, a total of 29 TDCs, 998 T5Hs, 16 SNATs, and 115 ASMTs within the genome of four Prunus genomes. A thorough investigation of melatonin-related genes was carried out using systematic biological methods and comparative genomics. Through phylogenetic analysis, orthologous clusters, Go enrichment, syntenic relationship, and gene duplication analysis, we discovered both similarities and variations in Melatonin genes among these Prunus species. Additionally, our study revealed the existence of unique subgroup members in the Melatonin genes of these species, which were distinct from those found in Arabidopsis genes. Furthermore, the transcriptomic expression analysis revealed the potential significance of melatonin genes in bud dormancy regulation and abiotic stresses. Our extensive results offer valuable perspectives on the evolutionary patterns, intricate expansion, and functions of PavMEL genes. Given their promising attributes, PavTDCs, PavT5H, PavNAT, and three PavASMT genes warrant in-depth exploration as prime candidates for manipulating dormancy in sweet cherry. This was done to lay the foundation for future explorations into the structural and functional aspects of these factors in Prunus species. This study offers significant insights into the functions of ASMT, SNAT, T5H, and TDC genes and sheds light on their roles in Prunus avium. Moreover, it established a robust foundation for further exploration functional characterization of melatonin genes in fruit species.

Indexed as

ArabidopsisMelatoninPrunusPrunus avium5-MethoxytryptamineAcetylserotonin O-MethyltransferaseGenomicsPhylogenyStress, Physiological5-MethoxytryptamineAcetylserotonin O-MethyltransferaseMelatoninComparative genomicN-acetylserotonin methyltransferase (ASMT)Prunus speciesSerotonin N-acetyltransferase (SNAT)Tryptamine 5-hydroxylase (T5H)Tryptophan decarboxylase (TDC)

Identifiers

PMID38462577
OpenAlexW4392652450

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.