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ArticleClinical epigenetics2024

MAL expression downregulation through suppressive H3K27me3 marks at the promoter in HPV16-related cervical cancers is prognostically relevant and manifested by the interplay of novel MAL antisense long noncoding RNA AC103563.8, E7 oncoprotein and EZH2.

Abarna Sinha, Abhisikta Ghosh, Arnab Ghosh, Sonia Mathai, Jaydip Bhaumik, Asima Mukhopadhyay, Arindam Maitra, Nidhan K Biswas, Sharmila Sengupta

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Article in Clinical epigenetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Abarna SinhaNational Institute of Biomedical Genomics, P.O.: N.S.S, Kalyani, 741251, West Bengal, India.
Abhisikta GhoshNational Institute of Biomedical Genomics, P.O.: N.S.S, Kalyani, 741251, West Bengal, India.
Arnab GhoshNational Institute of Biomedical Genomics, P.O.: N.S.S, Kalyani, 741251, West Bengal, India.
Sonia MathaiTata Medical Center, Kolkata, West Bengal, India.
Jaydip BhaumikTata Medical Center, Kolkata, West Bengal, India.
Asima MukhopadhyayKolkata Gynecological Oncology Trials and Translational Research Group, Kolkata, West Bengal, India.
Arindam MaitraNational Institute of Biomedical Genomics, P.O.: N.S.S, Kalyani, 741251, West Bengal, India.
Nidhan K BiswasNational Institute of Biomedical Genomics, P.O.: N.S.S, Kalyani, 741251, West Bengal, India.
Sharmila SenguptaNational Institute of Biomedical Genomics, P.O.: N.S.S, Kalyani, 741251, West Bengal, India. ssg1@nibmg.ac.in.ORCID 0000-0003-2462-5198
National Institute of Biomedical Genomics · INTata Medical Center · INCalcutta Research Group · IN

Funding

Department of Biotechnology, Ministry of Science and Technology, Government of India BT/Med-II/NIBMG/SyMeC/2014/Vol. IIDepartment of Biotechnology, Ministry of Science and Technology, Government of India BT/PR21452/MED/30/1781/2016
6 · The paper itself

Abstract

backgroundMAL (T-lymphocyte maturation-associated protein) is highly downregulated in most cancers, including cervical cancer (CaCx), attributable to promoter hypermethylation. Long noncoding RNA genes (lncGs) play pivotal roles in CaCx pathogenesis, by interacting with human papillomavirus (HPV)-encoded oncoproteins, and epigenetically regulating coding gene expression. Hence, we attempted to decipher the impact and underlying mechanisms of MAL downregulation in HPV16-related CaCx pathogenesis, by interrogating the interactive roles of MAL antisense lncRNA AC103563.8, E7 oncoprotein and PRC2 complex protein, EZH2.

resultsEmploying strand-specific RNA-sequencing, we confirmed the downregulated expression of MAL in association with poor overall survival of CaCx patients bearing HPV16, along with its antisense long noncoding RNA (lncRNA) AC103563.8. The strength of positive correlation between MAL and AC103563.8 was significantly high among patients compared to normal individuals. While downregulated expression of MAL was significantly associated with poor overall survival of CaCx patients bearing HPV16, AC103563.8 did not reveal any such association. We confirmed the enrichment of chromatin suppressive mark, H3K27me3 at MAL promoter, using ChIP-qPCR in HPV16-positive SiHa cells. Subsequent E7 knockdown in such cells significantly increased MAL expression, concomitant with decreased EZH2 expression and H3K27me3 marks at MAL promoter. In silico analysis revealed that both E7 and EZH2 bear the potential of interacting with AC103563.8, at the same binding domain. RNA immunoprecipitation with anti-EZH2 and anti-E7 antibodies, respectively, and subsequent quantitative PCR analysis in E7-silenced and unperturbed SiHa cells confirmed the interaction of AC103563.8 with EZH2 and E7, respectively. Apparently, AC103563.8 seems to preclude EZH2 and bind with E7, failing to block EZH2 function in patients. Thereby, enhanced EZH2 expression in the presence of E7 could potentially inactivate the MAL promoter through H3K27me3 marks, corroborating our previous results of MAL expression downregulation in patients.

conclusionAC103563.8-E7-EZH2 axis, therefore, appears to crucially regulate the expression of MAL, through chromatin inactivation in HPV16-CaCx pathogenesis, warranting therapeutic strategy development.

Indexed as

Myelin and Lymphocyte-Associated Proteolipid ProteinsOncogene Proteins, ViralRNA, Long NoncodingUterine Cervical NeoplasmsChromatinDNA MethylationDown-RegulationEnhancer of Zeste Homolog 2 ProteinFemaleHistonesHuman papillomavirus 16HumansPapillomavirus E7 ProteinsChromatinEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanHistonesMAL protein, humanMyelin and Lymphocyte-Associated Proteolipid ProteinsOncogene Proteins, ViralPapillomavirus E7 ProteinsRNA, Long NoncodingAntisense long noncoding RNA AC103563.8Cervical cancerEZH2-mediated H3K27me3 marksHPV16-E7MALPatient survival

Identifiers

PMID38461243
PMCPMC10924967
OpenAlexW4392633993

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.