Evidence map›Paper›PMID 38461228›Full record

ArticleBMC microbiology2024

Early transcriptional changes of heavy metal resistance and multiple efflux genes in Xanthomonas campestris pv. campestris under copper and heavy metal ion stress.

Stephen D B Ramnarine, Omar Ali, Jayaraj Jayaraman, Adesh Ramsubhag

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Synthesis and Antibacterial Activity of NovelMolecules (Basel, Switzerland) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Stephen D B RamnarineDepartment of Life Sciences, Faculty of Science and Technology, The University of The West Indies, St. Augustine campus, St. Augustine, Trinidad and Tobago, W. I.ORCID 0000-0002-0937-0046
Omar AliDepartment of Life Sciences, Faculty of Science and Technology, The University of The West Indies, St. Augustine campus, St. Augustine, Trinidad and Tobago, W. I.ORCID 0000-0003-0948-9060
Jayaraj JayaramanDepartment of Life Sciences, Faculty of Science and Technology, The University of The West Indies, St. Augustine campus, St. Augustine, Trinidad and Tobago, W. I.ORCID 0000-0002-4910-8712
Adesh RamsubhagDepartment of Life Sciences, Faculty of Science and Technology, The University of The West Indies, St. Augustine campus, St. Augustine, Trinidad and Tobago, W. I. adesh.ramsubhag@sta.uwi.edu.ORCID 0000-0002-5863-0457
University of the West Indies · TT

Funding

University of the West Indies, St. Augustine Campus CRP.5.APR17.45
6 · The paper itself

Abstract

backgroundCopper-induced gene expression in Xanthomonas campestris pv. campestris (Xcc) is typically evaluated using targeted approaches involving qPCR. The global response to copper stress in Xcc and resistance to metal induced damage is not well understood. However, homologs of heavy metal efflux genes from the related Stenotrophomonas genus are found in Xanthomonas which suggests that metal related efflux may also be present. METHODS AND

resultsGene expression in Xcc strain BrA1 exposed to 0.8 mM CuSO

conclusionsOverall, initial transcriptional responses focused on combating oxidative stress, mitigating protein damage and potentially increasing resistance to heavy metals and other biocides. A putative copper responsive efflux gene and others which might play a role in broader heavy metal resistance were also identified. Furthermore, the expression patterns of the cop operon in conjunction with other copper responsive genes allowed for a better understanding of the fate of copper ions in Xanthomonas. This work provides useful evidence for further evaluating MDR and other efflux pumps in metal-specific homeostasis and tolerance phenotypes in the Xanthomonas genus. Furthermore, non-canonical copper tolerance and resistance efflux pumps were potentially identified. These findings have implications for interpreting MIC differences among strains with homologous copLAB resistance genes, understanding survival under copper stress, and resistance in disease management.

Indexed as

XanthomonasXanthomonas campestrisBacterial ProteinsCopperBacterial ProteinsCopperCopCopper stressCopper toleranceEfflux pumpsHeavy metal stressMDROxidative stressRNA-seqTranscriptomeXanthomonas campestris pv. campestris

Identifiers

PMID38461228
PMCPMC10924375
OpenAlexW4392619865

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.