Evidence map›Paper›PMID 38459052›Full record

ArticleNature communications2024

Spatially-resolved transcriptomics reveal macrophage heterogeneity and prognostic significance in diffuse large B-cell lymphoma.

Min Liu, Giorgio Bertolazzi, Shruti Sridhar, Rui Xue Lee, Patrick Jaynes, Kevin Mulder, Nicholas Syn, Michal Marek Hoppe, Shuangyi Fan, Yanfen Peng and 19 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. IBA-1Research square · 2026
    Article
  18. Review
  19. Review
  20. Integrative Multiomics and Single-Cell Profiling Identify TNFRSF1AComputational and structural biotechnology journal · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Min LiuCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Giorgio BertolazziDepartment of Economics, Business and Statistics, University of Palermo, Palermo, Italy.
Shruti SridharCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Rui Xue LeeCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Patrick JaynesCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Kevin MulderSingapore Immunology Network, Agency for Science, Technology and Research, Singapore, Singapore.ORCID 0000-0002-1568-6581
Nicholas SynDepartment of Pathology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.ORCID 0000-0002-6343-176X
Michal Marek HoppeCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID 0000-0002-0364-6080
Shuangyi FanDepartment of Pathology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.
Yanfen PengCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID 0000-0003-1753-8547
Jocelyn ThngCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Reiya ChuaDepartment of Haematology-Oncology, National University Health System, Singapore, Singapore.
JayalakshmiDepartment of Haematology-Oncology, National University Health System, Singapore, Singapore.
Yogeshini BatumalaiDepartment of Haematology-Oncology, National University Health System, Singapore, Singapore.
Sanjay De MelDepartment of Haematology-Oncology, National University Health System, Singapore, Singapore.ORCID 0000-0002-8881-3537
Limei PoonDepartment of Haematology-Oncology, National University Health System, Singapore, Singapore.
Esther Hian Li ChanDepartment of Haematology-Oncology, National University Health System, Singapore, Singapore.
Joanne LeeDepartment of Haematology-Oncology, National University Health System, Singapore, Singapore.
Susan Swee-Shan HueDepartment of Pathology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.
Sheng-Tsung ChangDepartment of Pathology, Chi-Mei Medical Center, Tainan City, Taiwan, ROC.
Shih-Sung ChuangDepartment of Pathology, Chi-Mei Medical Center, Tainan City, Taiwan, ROC.
K George ChandyLee Kong Chian School of Medicine, Nanyang Technological University Singapore, Singapore, Singapore.
Xiaofei YeKindstar Global Precision Medicine Institute, Wuhan, PR China.ORCID 0000-0002-7678-1152
Qiang Pan-HammarströmDivision of Immunology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0003-1990-8804
Florent GinhouxSingapore Immunology Network, Agency for Science, Technology and Research, Singapore, Singapore.ORCID 0000-0002-2857-7755
Yen Lin CheeDepartment of Haematology-Oncology, National University Health System, Singapore, Singapore.
Siok-Bian NgCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID 0000-0001-6051-6410
Claudio TripodoTumor Immunology Unit, Department of Sciences for Health Promotion and Mother-Child Care "G. D'Alessandro", University of Palermo, Palermo, Italy. claudio.tripodo@unipa.it.ORCID 0000-0002-0821-6231
Anand D JeyasekharanCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore. csiadj@nus.edu.sg.ORCID 0000-0001-9816-6137

Funding

China Scholarship Council (CSC) 202006940018Fondazione Italiana per la Ricerca sul Cancro (Italian Foundation for Cancer Research) 22145Fondazione Italiana per la Ricerca sul Cancro (Italian Foundation for Cancer Research) 22759MOH | National Medical Research Council (NMRC) MOH-000715-00
6 · The paper itself

Abstract

Macrophages are abundant immune cells in the microenvironment of diffuse large B-cell lymphoma (DLBCL). Macrophage estimation by immunohistochemistry shows varying prognostic significance across studies in DLBCL, and does not provide a comprehensive analysis of macrophage subtypes. Here, using digital spatial profiling with whole transcriptome analysis of CD68+ cells, we characterize macrophages in distinct spatial niches of reactive lymphoid tissues (RLTs) and DLBCL. We reveal transcriptomic differences between macrophages within RLTs (light zone /dark zone, germinal center/ interfollicular), and between disease states (RLTs/ DLBCL), which we then use to generate six spatially-derived macrophage signatures (MacroSigs). We proceed to interrogate these MacroSigs in macrophage and DLBCL single-cell RNA-sequencing datasets, and in gene-expression data from multiple DLBCL cohorts. We show that specific MacroSigs are associated with cell-of-origin subtypes and overall survival in DLBCL. This study provides a spatially-resolved whole-transcriptome atlas of macrophages in reactive and malignant lymphoid tissues, showing biological and clinical significance.

Indexed as

Lymphoma, Large B-Cell, DiffuseGene Expression ProfilingGerminal CenterHumansPrognosisTranscriptomeTumor Microenvironment

Identifiers

PMID38459052
PMCPMC10923916

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.