Evidence map›Paper›PMID 38459027›Full record

ArticleNature communications2024

Structural basis for self-discrimination by neoantigen-specific TCRs.

John P Finnigan, Jenna H Newman, Yury Patskovsky, Larysa Patskovska, Andrew S Ishizuka, Geoffrey M Lynn, Robert A Seder, Michelle Krogsgaard, Nina Bhardwaj

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular origin, discovery, validation and application of neoantigens.Asian journal of pharmaceutical sciences · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Shared neoantigens for cancer immunotherapy.Molecular therapy. Oncology · 2025
    Review
  10. Article
  11. Review
  12. Strengths and limitations of web servers for the modeling of TCRpMHC complexes.Computational and structural biotechnology journal · 2024
    Article
  13. Focusing on CD8Journal of experimental & clinical cancer research : CR · 2024
    Review
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

John P Finnigan *Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Pl., New York, NY, USA.
Jenna H Newman *Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Pl., New York, NY, USA.
Yury Patskovsky *Department of Pathology, New York University Grossman School of Medicine, New York, NY, USA.
Larysa PatskovskaDepartment of Pathology, New York University Grossman School of Medicine, New York, NY, USA.
Andrew S IshizukaVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Geoffrey M LynnVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Robert A SederVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0003-3133-0849
Michelle KrogsgaardDepartment of Pathology, New York University Grossman School of Medicine, New York, NY, USA. michelle.krogsgaard@nyulangone.org.ORCID 0000-0001-5006-7981
Nina BhardwajIcahn School of Medicine at Mount Sinai, One Gustave L. Levy Pl., New York, NY, USA. nina.bhardwaj@mssm.edu.ORCID 0000-0003-1865-4187
National Institutes of Health · USNYU Langone Health · USMount Sinai Hospital · USBrigham and Women's Hospital · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
Project 4P50CA225450 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI OSMAN, IMAN, WEBER, JEFFREY S · 2019 to 2025
$12.5M
TRAINING PROGRAM IN CANCER THERAPYT32CA078207 · NCI · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI James J Manfredi · 1999 to 2026
$11.6M
Translational Immunology Training ProgramT32AI078892 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Karen Leigh Edelblum, SERGIO A. LIRA · 2008 to 2026
$4.5M
Mechanisms of impaired T-cell mechanosensing of melanoma antigensU01CA214354 · NCI · GEORGIA INSTITUTE OF TECHNOLOGY · PI KROGSGAARD, MICHELLE, ZHU, CHENG · 2017 to 2021
$3.9M
T-cell intrinsic mechanisms of resistance to PD-1 checkpoint blockadeR01CA243486 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KROGSGAARD, MICHELLE, ZHU, CHENG · 2020 to 2024
$3.5M
NK cell exhaustion in metastatic melanomaR01CA201189 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BHARDWAJ, NINA · 2016 to 2020
$2.1M
Mechanisms of initiation of T-cell signaling by the TCR-CD3 complexR01GM124489 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KROGSGAARD, MICHELLE · 2018 to 2021
$2.1M
Optimizing TCR-CD3 signaling for immunotherapy of cancerR01CA284604 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MICHELLE KROGSGAARD, Cheng Zhu · 2024 to 2026
$1.9M
NCI NIH HHS P30 CA016087NCI NIH HHS P50 CA225450NCI NIH HHS R01 CA201189NCI NIH HHS R01 CA243486NCI NIH HHS R01 CA284604NCI NIH HHS T32 CA078207NCI NIH HHS U01 CA214354NIAID NIH HHS T32 AI078892NIGMS NIH HHS R01 GM124489
6 · The paper itself

Abstract

T cell receptors (TCR) are pivotal in mediating tumour cell cytolysis via recognition of mutation-derived tumour neoantigens (neoAgs) presented by major histocompatibility class-I (MHC-I). Understanding the factors governing the emergence of neoAg from somatic mutations is a major focus of current research. However, the structural and cellular determinants controlling TCR recognition of neoAgs remain poorly understood. This study describes the multi-level analysis of a model neoAg from the B16F10 murine melanoma, H2-D

Indexed as

MelanomaReceptors, Antigen, T-CellAnimalsEpitopes, T-LymphocyteMiceMutationEpitopes, T-LymphocyteReceptors, Antigen, T-Cell

Identifiers

PMID38459027
PMCPMC10924104
OpenAlexW4392588447

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.