Evidence map›Paper›PMID 38457522›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Fluorescent proteins generate a genetic color polymorphism and counteract oxidative stress in intertidal sea anemones.

D Nathaniel Clarke, Noah H Rose, Evelien De Meulenaere, Benyamin Rosental, John S Pearse, Vicki Buchsbaum Pearse, Dimitri D Deheyn

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. The function and consequences of fluorescence in tetrapods.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

D Nathaniel ClarkeDepartment of Biology, Hopkins Marine Station, Stanford University, Pacific Grove, CA 93950.ORCID 0000-0002-9774-2582
Noah H RoseDepartment of Biology, Hopkins Marine Station, Stanford University, Pacific Grove, CA 93950.
Evelien De MeulenaereMarine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92037.
Benyamin RosentalThe Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Center for Regenerative Medicine and Stem Cells, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel.
John S PearseDepartment of Ecology and Evolutionary Biology, Joseph M. Long Marine Laboratory, University of California, Santa Cruz, CA 95060.
Vicki Buchsbaum PearseDepartment of Biology, Hopkins Marine Station, Stanford University, Pacific Grove, CA 93950.ORCID 0009-0006-2491-0940
Dimitri D DeheynMarine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92037.ORCID 0000-0002-6496-9297
Pacific University · USScripps Institution of Oceanography · USUniversity of California, Santa Cruz · USBen-Gurion University of the Negev · IL

Funding

DOD | USAF | AMC | Air Force Office of Scientific Research (AFOSR) FA9550-17-0189Earl H. and Ethel M. Myers Oceanographic and Marine Biology Trust (Myers Oceanographic & Marine Biology Trust) NANational Science Foundation (NSF) DGE-114747
6 · The paper itself

Abstract

Fluorescent proteins (FPs) are ubiquitous tools in research, yet their endogenous functions in nature are poorly understood. In this work, we describe a combination of functions for FPs in a clade of intertidal sea anemones whose FPs control a genetic color polymorphism together with the ability to combat oxidative stress. Focusing on the underlying genetics of a fluorescent green "Neon" color morph, we show that allelic differences in a single FP gene generate its strong and vibrant color, by increasing both molecular brightness and FP gene expression level. Natural variation in FP sequences also produces differences in antioxidant capacity. We demonstrate that these FPs are strong antioxidants that can protect live cells against oxidative stress. Finally, based on structural modeling of the responsible amino acids, we propose a model for FP antioxidant function that is driven by molecular surface charge. Together, our findings shed light on the multifaceted functions that can co-occur within a single FP and provide a framework for studying the evolution of fluorescence as it balances spectral and physiological functions in nature.

Indexed as

Sea AnemonesAnimalsAntioxidantsGreen Fluorescent ProteinsLuminescent ProteinsOxidative StressSpectrometry, FluorescenceAntioxidantsGreen Fluorescent ProteinsLuminescent ProteinsAnthopleuraantioxidantbiofluorescenceGFPpolymorphism

Identifiers

PMID38457522
PMCPMC10945830
OpenAlexW4392581471

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.