Evidence map›Paper›PMID 38457497›Full record

ArticleScience advances2024

Large-FOV 3D localization microscopy by spatially variant point spread function generation.

Dafei Xiao, Reut Kedem Orange, Nadav Opatovski, Amit Parizat, Elias Nehme, Onit Alalouf, Yoav Shechtman

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Deep Learning for Localization Microscopy in 2D and 3D.Accounts of chemical research · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dafei XiaoRussell Berrie Nanotechnology Institute, Technion-Israel Institute of Technology, Haifa, Israel.ORCID 0009-0001-5126-9742
Reut Kedem OrangeRussell Berrie Nanotechnology Institute, Technion-Israel Institute of Technology, Haifa, Israel.
Nadav OpatovskiRussell Berrie Nanotechnology Institute, Technion-Israel Institute of Technology, Haifa, Israel.ORCID 0000-0001-6975-1804
Amit ParizatDepartment of Biomedical Engineering, Technion-Israel Institute of Technology, Haifa, Israel.
Elias NehmeDepartment of Biomedical Engineering, Technion-Israel Institute of Technology, Haifa, Israel.ORCID 0000-0003-1759-1751
Onit AlaloufDepartment of Biomedical Engineering, Technion-Israel Institute of Technology, Haifa, Israel.ORCID 0000-0002-7473-6913
Yoav ShechtmanRussell Berrie Nanotechnology Institute, Technion-Israel Institute of Technology, Haifa, Israel.ORCID 0000-0001-8498-5203

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accurate characterization of the microscopic point spread function (PSF) is crucial for achieving high-performance localization microscopy (LM). Traditionally, LM assumes a spatially invariant PSF to simplify the modeling of the imaging system. However, for large fields of view (FOV) imaging, it becomes important to account for the spatially variant nature of the PSF. Here, we propose an accurate and fast principal components analysis-based field-dependent 3D PSF generator (PPG3D) and localizer for LM. Through simulations and experimental three-dimensional (3D) single-molecule localization microscopy (SMLM), we demonstrate the effectiveness of PPG3D, enabling super-resolution imaging of mitochondria and microtubules with high fidelity over a large FOV. A comparison of PPG3D with a shift-variant PSF generator for 3D LM reveals a threefold improvement in accuracy. Moreover, PPG3D is approximately 100 times faster than existing PSF generators, when used in image plane-based interpolation mode. Given its user-friendliness, we believe that PPG3D holds great potential for widespread application in SMLM and other imaging modalities.

Identifiers

PMID38457497
PMCPMC10923516

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.