Evidence map›Paper›PMID 38457400›Full record

ArticlePloS one2024

The primary ciliary dyskinesia-related genetic risk score is associated with susceptibility to adult-onset asthma.

Rie Shigemasa, Hironori Masuko, Hisayuki Oshima, Kentaro Hyodo, Haruna Kitazawa, Jun Kanazawa, Yohei Yatagai, Hiroaki Iijima, Takashi Naito, Takefumi Saito and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Rie ShigemasaDepartment of Pulmonary Medicine, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Hironori MasukoDepartment of Pulmonary Medicine, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.ORCID 0000-0002-5917-7973
Hisayuki OshimaDepartment of Pulmonary Medicine, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Kentaro HyodoDepartment of Pulmonary Medicine, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Haruna KitazawaDepartment of Pulmonary Medicine, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Jun KanazawaDepartment of Pulmonary Medicine, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Yohei YatagaiDepartment of Pulmonary Medicine, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Hiroaki IijimaTsukuba Medical Center, Tsukuba, Japan.
Takashi NaitoTsukuba Medical Center, Tsukuba, Japan.
Takefumi SaitoNational Hospital Organization Ibaraki Higashi National Hospital, Tokai, Japan.
Satoshi KonnoDepartment of Respiratory Medicine, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
Tomomitsu HirotaResearch Center for Medical Science, The Jikei University School of Medicine, Tokyo, Japan.
Mayumi TamariResearch Center for Medical Science, The Jikei University School of Medicine, Tokyo, Japan.
Tohru SakamotoDepartment of Pulmonary Medicine, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Nobuyuki HizawaDepartment of Pulmonary Medicine, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
University of Tsukuba · JPJikei University School of Medicine · JPTsukuba Medical Center Hospital · JPHokkaido University · JPNational Hospital Organization · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDisturbance of mucociliary clearance is an important factor in the pathogenesis of asthma. We hypothesized that common variants in genes responsible for ciliary function may contribute to the development of asthma with certain phenotypes.

methodsThree independent adult Japanese populations (including a total of 1,158 patients with asthma and 2,203 non-asthmatic healthy participants) were studied. First, based on the ClinVar database (https://www.ncbi.nlm.nih.gov/clinvar/), we selected 12 common single-nucleotide polymorphisms (SNPs) with molecular consequences (missense, nonsense, and 3'-untranslated region mutation) in 5 primary ciliary dyskinesia (PCD)-related genes and calculated a PCD-genetic risk score (GRS) as a cumulative effect of these PCD-related genes. Second, we performed a two-step cluster analysis using 3 variables, including PCD-GRS, forced expiratory volume in 1 second (%predicted FEV1), and age of asthma onset.

resultsCompared to adult asthma clusters with an average PCD-GRS, clusters with high and low PCD-GRS had similar overall characteristics: adult-onset, female predominance, preserved lung function, and fewer features of type 2 immunity as determined by IgE reactivity and blood eosinophil counts. The allele frequency of rs1530496, a SNP representing an expression quantitative trait locus (eQTL) of DNAH5 in the lung, showed the largest statistically significant difference between the PCD-GRS-High and PCD-GRS-Low asthma clusters (p = 1.4 x 10-15).

conclusionGenes associated with PCD, particularly the common SNPs associated with abnormal expression of DNAH5, may have a certain influence on the development of adult-onset asthma, perhaps through impaired mucociliary clearance.

Indexed as

AsthmaCiliary Motility DisordersAdultFemaleGenetic Risk ScoreHumansLungMaleMucociliary Clearance

Identifiers

PMID38457400
PMCPMC10923447
OpenAlexW4392582711

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.