Evidence map›Paper›PMID 38456586›Full record

ArticleBirth defects research2024

Human split hand/foot variants are not as functional as wildtype human PRDM1 in the rescue of craniofacial defects.

Brittany T Truong, Lomeli C Shull, Bryan J Zepeda, Ezra Lencer, Kristin B Artinger

Open access · hybridAbstract read
In one paragraph

Article in Birth defects research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Brittany T TruongHuman Medical Genetics & Genomics Graduate Program, University of Colorado Denver Anschutz Medical Campus, Aurora, Colorado, USA.
Lomeli C ShullDepartment of Craniofacial Development, University of Colorado Denver Anschutz Medical Campus, Aurora, Colorado, USA.
Bryan J ZepedaDepartment of Diagnostic and Biological Sciences, University of Minnesota School of Dentistry, Minneapolis, Minnesota, USA.
Ezra LencerBiology Department, Lafayette College, Easton, Pennsylvania, USA.
Kristin B ArtingerDepartment of Craniofacial Development, University of Colorado Denver Anschutz Medical Campus, Aurora, Colorado, USA.ORCID 0000-0002-3003-6042
University of Colorado Anschutz Medical Campus · USUniversity of Minnesota · USLafayette College · US

Funding

Genetic and epigenetic regulation of cranial neural crest differentiationR01DE030377 · NIDCR · UNIVERSITY OF MINNESOTA · PI ARTINGER, KRISTIN · 2021 to 2025
$2.1M
Mechanistic analysis of novel genetic loci for split hand foot malformationR03HD096320 · NICHD · UNIVERSITY OF COLORADO DENVER · PI ARTINGER, KRISTIN, FLANAGAN STEET, HEATHER R · 2019 to 2020
$211k
Understanding the role of PRDM1 in limb development and split hand/foot malformation.F31HD103368 · NICHD · UNIVERSITY OF COLORADO DENVER · PI TRUONG, BRITTANY · 2020 to 2022
$105k
NICHD NIH HHS F31 HD103368NICHD NIH HHS R03 HD096320NIDCR NIH HHS R01 DE030377
6 · The paper itself

Abstract

backgroundSplit hand/foot malformation (SHFM) is a congenital limb disorder presenting with limb anomalies, such as missing, hypoplastic, or fused digits, and often craniofacial defects, including a cleft lip/palate, microdontia, micrognathia, or maxillary hypoplasia. We previously identified three novel variants in the transcription factor, PRDM1, that are associated with SHFM phenotypes. One individual also presented with a high arch palate. Studies in vertebrates indicate that PRDM1 is important for development of the skull; however, prior to our study, human variants in PRDM1 had not been associated with craniofacial anomalies.

methodsUsing transient mRNA overexpression assays in prdm1a

resultsThe prdm1a

conclusionThese data suggest that the three SHFM variants are likely not functional and may be associated with the craniofacial defects observed in the humans. Finally, they demonstrate how Prdm1a can directly bind and regulate genes involved in craniofacial development.

Indexed as

Cleft LipCleft PalateAnimalsHumansPositive Regulatory Domain I-Binding Factor 1SkullSyndromeTranscription FactorsZebrafishZebrafish ProteinsPositive Regulatory Domain I-Binding Factor 1prdm1a protein, zebrafishPRDM1 protein, humanTranscription FactorsZebrafish ProteinscraniofacialPRDM1split hand/foot malformationzebrafish

Identifiers

PMID38456586
PMCPMC10949536
OpenAlexW4392591311

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.