Evidence map›Paper›PMID 38453899›Full record

ArticleNature communications2024

Dimerization-dependent serine protease activity of FAM111A prevents replication fork stalling at topoisomerase 1 cleavage complexes.

Sowmiya Palani, Yuka Machida, Julia R Alvey, Vandana Mishra, Allison L Welter, Gaofeng Cui, Benoît Bragantini, Maria Victoria Botuyan, Anh T Q Cong, Georges Mer and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Host use drives convergent evolution in clownfish.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Sowmiya Palani *Mayo Clinic Graduate School of Biomedical Sciences, Mayo Clinic, Rochester, MN, USA.
Yuka Machida *Department of Oncology, Division of Oncology Research, Mayo Clinic, Rochester, MN, USA.
Julia R AlveyDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0001-6549-9816
Vandana MishraDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.
Allison L WelterMayo Clinic Graduate School of Biomedical Sciences, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0001-6132-8737
Gaofeng CuiDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0001-5267-9033
Benoît BragantiniDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-5409-2938
Maria Victoria BotuyanDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-6466-7432
Anh T Q CongDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0001-9307-7741
Georges MerDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-1900-1578
Matthew J SchellenbergDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA. schellenberg.matthew@mayo.edu.ORCID 0000-0001-7036-5943
Yuichi J MachidaDepartment of Oncology, Division of Oncology Research, Mayo Clinic, Rochester, MN, USA. yuichi.machida@nih.gov.ORCID 0000-0003-1414-0568
Mayo Clinic in Arizona · USMayo Clinic · USNational Cancer Institute · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI STEVEN E EALICK · 2018 to 2026
$34.2M
DNA Replication and RepairZIABC012086 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MACHIDA, YUICHI · 2022 to 2025
$4.9M
Structural biology of DNA damage response in chromatinR35GM136262 · NIGMS · MAYO CLINIC ROCHESTER · PI MER, GEORGES · 2020 to 2025
$4.2M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
DNA-Protein Crosslinks and Genomic InstabilityR01CA233700 · NCI · MAYO CLINIC ROCHESTER · PI SCHELLENBERG, MATTHEW J · 2019 to 2023
$1.8M
Intramural NIH HHS ZIA BC012086NCI NIH HHS R01 CA233700NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R35 GM136262NIH HHS S10 OD021527
6 · The paper itself

Abstract

FAM111A, a serine protease, plays roles in DNA replication and antiviral defense. Missense mutations in the catalytic domain cause hyper-autocleavage and are associated with genetic disorders with developmental defects. Despite the enzyme's biological significance, the molecular architecture of the FAM111A serine protease domain (SPD) is unknown. Here, we show that FAM111A is a dimerization-dependent protease containing a narrow, recessed active site that cleaves substrates with a chymotrypsin-like specificity. X-ray crystal structures and mutagenesis studies reveal that FAM111A dimerizes via the N-terminal helix within the SPD. This dimerization induces an activation cascade from the dimerization sensor loop to the oxyanion hole through disorder-to-order transitions. Dimerization is essential for proteolytic activity in vitro and for facilitating DNA replication at DNA-protein crosslink obstacles in cells, while it is dispensable for autocleavage. These findings underscore the role of dimerization in FAM111A's function and highlight the distinction in its dimerization dependency between substrate cleavage and autocleavage.

Indexed as

Serine EndopeptidasesSerine ProteasesDimerizationDNA ReplicationProteolysisSerineSerineSerine EndopeptidasesSerine Proteases

Identifiers

PMID38453899
PMCPMC10920703
OpenAlexW4392561002

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.