Evidence map›Paper›PMID 38453895›Full record

ReviewCell death & disease2024

Isoform alterations in the ubiquitination machinery impacting gastrointestinal malignancies.

Srimathi Kasturirangan, Derek J Nancarrow, Ayush Shah, Kiran H Lagisetty, Theodore S Lawrence, David G Beer, Dipankar Ray

Open access · goldAbstract readReview
In one paragraph

Review in Cell death & disease, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Splicing-driven post-translational dysregulation: a new frontier for precision cancer medicine and immunotherapy.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Srimathi Kasturirangan *Departments of Radiation Oncology, University of Michigan, Ann Arbor, MI, 48109, USA.
Derek J Nancarrow *Surgery - Section of Thoracic Surgery, University of Michigan, Ann Arbor, MI, 48109, USA.
Ayush ShahDepartments of Radiation Oncology, University of Michigan, Ann Arbor, MI, 48109, USA.
Kiran H LagisettySurgery - Section of Thoracic Surgery, University of Michigan, Ann Arbor, MI, 48109, USA.
Theodore S LawrenceDepartments of Radiation Oncology, University of Michigan, Ann Arbor, MI, 48109, USA.
David G BeerSurgery - Section of Thoracic Surgery, University of Michigan, Ann Arbor, MI, 48109, USA.
Dipankar RayDepartments of Radiation Oncology, University of Michigan, Ann Arbor, MI, 48109, USA. dipray@umich.edu.ORCID 0000-0002-1297-2312
University of Michigan · USThomas Jefferson University · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
Validation & Pathology CoreU54CA163059 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RUBENSTEIN, JOEL H, WANG, THOMAS D · 2011 to 2022
$12.1M
RNF128 Regulation of TP53 in Barrett's ProgressionR01CA215596 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BEER, DAVID GEORGE, NANCARROW, DEREK JOHN · 2017 to 2021
$2.1M
NCI NIH HHS P30 CA046592NCI NIH HHS R01 CA215596NCI NIH HHS U54 CA163059
6 · The paper itself

Abstract

The advancement of RNAseq and isoform-specific expression platforms has led to the understanding that isoform changes can alter molecular signaling to promote tumorigenesis. An active area in cancer research is uncovering the roles of ubiquitination on spliceosome assembly contributing to transcript diversity and expression of alternative isoforms. However, the effects of isoform changes on functionality of ubiquitination machineries (E1, E2, E3, E4, and deubiquitinating (DUB) enzymes) influencing onco- and tumor suppressor protein stabilities is currently understudied. Characterizing these changes could be instrumental in improving cancer outcomes via the identification of novel biomarkers and targetable signaling pathways. In this review, we focus on highlighting reported examples of direct, protein-coded isoform variation of ubiquitination enzymes influencing cancer development and progression in gastrointestinal (GI) malignancies. We have used a semi-automated system for identifying relevant literature and applied established systems for isoform categorization and functional classification to help structure literature findings. The results are a comprehensive snapshot of known isoform changes that are significant to GI cancers, and a framework for readers to use to address isoform variation in their own research. One of the key findings is the potential influence that isoforms of the ubiquitination machinery have on oncoprotein stability.

Indexed as

Gastrointestinal NeoplasmsCarcinogenesisHumansProtein IsoformsTumor Suppressor ProteinsUbiquitinationUbiquitin-Protein LigasesProtein IsoformsTumor Suppressor ProteinsUbiquitin-Protein Ligases

Identifiers

PMID38453895
PMCPMC10920915
OpenAlexW4392594404

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.