Evidence map›Paper›PMID 38452436›Full record

ArticleESMO open2024

Analytical validation of HER2DX genomic test for early-stage HER2-positive breast cancer.

M Marín-Aguilera, P Jares, E Sanfeliu, G Villacampa, E Hernández-Lllán, A I Martínez-Puchol, S Shankar, B González-Farré, A G Waks, F Brasó-Maristany and 30 more

Open access · goldAbstract read
In one paragraph

Article in ESMO open, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 25 citations in OpenAlex.

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  9. Associations of the HER2DX Genomic Test with Biological and Pathologic Features in HER2-Positive Breast Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors at 10 institutions in 2 countries.

M Marín-AguileraScientific Department, Reveal Genomics, S.L., Barcelona, Spain.
P JaresPathology Department, Hospital Clínic of Barcelona, Barcelona, Spain; Molecular Biology Core, Hospital Clínic Barcelona, Barcelona, Spain.
E SanfeliuPathology Department, Hospital Clínic of Barcelona, Barcelona, Spain.
G VillacampaSOLTI Breast Cancer Research Group, Barcelona, Spain; Statistical Unit, Vall d'Hebron Institute of Oncology, Barcelona, Spain.
E Hernández-LllánMolecular Biology Core, Hospital Clínic Barcelona, Barcelona, Spain.
A I Martínez-PucholMolecular Biology Core, Hospital Clínic Barcelona, Barcelona, Spain.
S ShankarDepartment of Pathology, Center for Advanced Medical Diagnostics, Brigham and Women's Hospital, Boston, USA.
B González-FarréPathology Department, Hospital Clínic of Barcelona, Barcelona, Spain.
A G WaksDepartment of Pathology, Center for Advanced Medical Diagnostics, Brigham and Women's Hospital, Boston, USA.
F Brasó-MaristanyScientific Department, Reveal Genomics, S.L., Barcelona, Spain; Translational Genomics and Targeted Therapies in Solid Tumors, IDIBAPS, Barcelona, Spain.
F PardoTranslational Genomics and Targeted Therapies in Solid Tumors, IDIBAPS, Barcelona, Spain.
D K ManningDepartment of Pathology, Center for Advanced Medical Diagnostics, Brigham and Women's Hospital, Boston, USA.
J A AberyEremid Genomic Services, LLC, Kannapolis, USA.
J CurabaEremid Genomic Services, LLC, Kannapolis, USA.
L MoonEremid Genomic Services, LLC, Kannapolis, USA.
O GordonEremid Genomic Services, LLC, Kannapolis, USA.
P GalvánScientific Department, Reveal Genomics, S.L., Barcelona, Spain; Translational Genomics and Targeted Therapies in Solid Tumors, IDIBAPS, Barcelona, Spain.
P WachirakantapongDepartment of Pathology, Center for Advanced Medical Diagnostics, Brigham and Women's Hospital, Boston, USA.
O CastilloTranslational Genomics and Targeted Therapies in Solid Tumors, IDIBAPS, Barcelona, Spain.
C M NeeDepartment of Pathology, Center for Advanced Medical Diagnostics, Brigham and Women's Hospital, Boston, USA.
P BlascoTranslational Genomics and Targeted Therapies in Solid Tumors, IDIBAPS, Barcelona, Spain.
T H SenevirathneDepartment of Pathology, Center for Advanced Medical Diagnostics, Brigham and Women's Hospital, Boston, USA.
V SirenkoTranslational Genomics and Targeted Therapies in Solid Tumors, IDIBAPS, Barcelona, Spain.
O Martínez-SáezTranslational Genomics and Targeted Therapies in Solid Tumors, IDIBAPS, Barcelona, Spain; Medical Oncology Department, Hospital Clinic Barcelona, Barcelona, Spain; Department of Medicine, University of Barcelona, Barcelona, Spain.
A AguirreTranslational Genomics and Targeted Therapies in Solid Tumors, IDIBAPS, Barcelona, Spain.
I E KropYale Cancer Center, New Haven, USA.
Z LiDana-Farber Cancer Institute, Boston, USA; Harvard Medical School, Boston, USA.
P SpellmanOregon Health and Science University, Portland, USA.
O Metzger FilhoDepartment of Pathology, Center for Advanced Medical Diagnostics, Brigham and Women's Hospital, Boston, USA; Harvard Medical School, Boston, USA.
K PolyakDana-Farber Cancer Institute, Boston, USA; Harvard Medical School, Boston, USA.
P MichaelsDepartment of Pathology, Center for Advanced Medical Diagnostics, Brigham and Women's Hospital, Boston, USA.
J A Puig-ButilléMolecular Biology Core, Hospital Clínic Barcelona, Barcelona, Spain.
A VivancosCancer Genomics Core, Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain.
J MatitoScientific Department, Reveal Genomics, S.L., Barcelona, Spain; Cancer Genomics Core, Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain.
W BuckinghamScientific Department, Reveal Genomics, S.L., Barcelona, Spain.
C M PerouDepartment of Genetics, Lineberger Comprehensive Cancer Center, Chapel Hill, USA.
P Villagrasa-GonzálezScientific Department, Reveal Genomics, S.L., Barcelona, Spain.
A PratScientific Department, Reveal Genomics, S.L., Barcelona, Spain; Translational Genomics and Targeted Therapies in Solid Tumors, IDIBAPS, Barcelona, Spain; Medical Oncology Department, Hospital Clinic Barcelona, Barcelona, Spain; Department of Medicine, University of Barcelona, Barcelona, Spain; Breast Cancer Unit, IOB-Quirón Salud, Barcelona, Spain.
J S ParkerDepartment of Genetics, Lineberger Comprehensive Cancer Center, Chapel Hill, USA.
L ParéScientific Department, Reveal Genomics, S.L., Barcelona, Spain. Electronic address: lpare@reveal-genomics.com.
Brigham and Women's Hospital · USHospital Clínic de Barcelona · ESBreast Cancer Research Foundation · USConsorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESOryzon Genomics (Spain) · ESHarvard University · USUNC Lineberger Comprehensive Cancer CenterCIBBIM-Nanomedicine · ESOregon Health & Science University · USYale Cancer Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHER2DX, a multianalyte genomic test, has been clinically validated to predict breast cancer recurrence risk (relapse risk score), the probability of achieving pathological complete response post-neoadjuvant therapy (pCR likelihood score), and individual ERBB2 messenger RNA (mRNA) expression levels in patients with early-stage human epidermal growth factor receptor 2 (HER2)-positive breast cancer. This study delves into the comprehensive analysis of HER2DX's analytical performance. MATERIALS AND

methodsPrecision and reproducibility of HER2DX risk, pCR, and ERBB2 mRNA scores were assessed within and between laboratories using formalin-fixed paraffin-embedded (FFPE) tumor tissues and purified RNA. Robustness was appraised by analyzing the impact of tumor cell content and protocol variations including different instruments, reagent lots, and different RNA extraction kits. Variability was evaluated across intratumor biopsies and genomic platforms [RNA sequencing (RNAseq) versus nCounter], and according to protocol variations.

resultsPrecision analysis of 10 FFPE tumor samples yielded a maximal standard error of 0.94 across HER2DX scores (1-99 scale). High reproducibility of HER2DX scores across 29 FFPE tumors and 20 RNAs between laboratories was evident (correlation coefficients >0.98). The probability of identifying score differences >5 units was ≤5.2%. No significant variability emerged based on platform instruments, reagent lots, RNA extraction kits, or TagSet thaw/freeze cycles. Moreover, HER2DX displayed robustness at low tumor cell content (10%). Intratumor variability across 212 biopsies (106 tumors) was <4.0%. Concordance between HER2DX scores from 30 RNAs on RNAseq and nCounter platforms exceeded 90.0% (Cohen's κ coefficients >0.80).

conclusionsThe HER2DX assay is highly reproducible and robust for the quantification of recurrence risk, pCR likelihood, and ERBB2 mRNA expression in early-stage HER2-positive breast cancer.

Indexed as

Breast NeoplasmsFemaleHumansNeoplasm Recurrence, LocalReproducibility of ResultsRNARNA, MessengerRNARNA, Messengeranalytical validationbreast cancergene expressionHER2DXRNA

Identifiers

PMID38452436
PMCPMC10937240
OpenAlexW4392504109

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.