Evidence map›Paper›PMID 38451962›Full record

ArticleHepatology (Baltimore, Md.)2024

Development of a liver disease-specific large language model chat interface using retrieval-augmented generation.

Jin Ge, Steve Sun, Joseph Owens, Victor Galvez, Oksana Gologorskaya, Jennifer C Lai, Mark J Pletcher, Ki Lai

Abstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Large Language Models in Gastroenterology: Systematic Review.Journal of medical Internet research · 2024
    Pooled it
  2. Trial
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  7. Review
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  10. Innovations in Liver Transplant.Gastroenterology & hepatology · 2026
    Article
  11. Article
  12. Article
  13. Emerging applications of traditional and generative artificial intelligence in liver transplantation.Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society · 2026
    Article
  14. GIVersa-Endoscopy: A Large Language Model-Based Artificial Intelligence Assistant for Endoscopy Sedation Triage.Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association · 2026
    Article
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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Jin GeDepartment of Medicine, Division of Gastroenterology and Hepatology, University of California-San Francisco, San Francisco, California, USA.ORCID 0000-0003-1574-1525
Steve SunUCSF Health Information Technology, University of California-San Francisco, San Francisco, California, USA.
Joseph OwensUCSF Health Information Technology, University of California-San Francisco, San Francisco, California, USA.
Victor GalvezUCSF Health Information Technology, University of California-San Francisco, San Francisco, California, USA.
Oksana GologorskayaUCSF Health Information Technology, University of California-San Francisco, San Francisco, California, USA.ORCID 0009-0005-3505-7300
Jennifer C LaiDepartment of Medicine, Division of Gastroenterology and Hepatology, University of California-San Francisco, San Francisco, California, USA.ORCID 0000-0003-2092-6380
Mark J PletcherDepartment of Epidemiology and Biostatistics, University of California-San Francisco, San Francisco, California, USA.ORCID 0000-0002-6966-1312
Ki LaiUCSF Health Information Technology, University of California-San Francisco, San Francisco, California, USA.

Funding

Clinical and Translational Science InstituteUL1TR001872 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COLLARD, HAROLD R, JACOBY, VANESSA · 2016 to 2025
$112.1M
UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer Y. Chen · 1986 to 2026
$30.7M
VARC CoreP30AG044281 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI W. JOHN BOSCARDIN · 2013 to 2026
$19.9M
Institutional Career Development Core SupplementKL2TR001870 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KANAYA, ALKA M., SARKAR, URMIMALA · 2016 to 2025
$19.7M
The spectrum of cognitive impairment including Alzheimer’s Disease and Related Dementias after liver transplantationR01AG059183 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer C. Lai · 2018 to 2026
$9.9M
The Impact of Frailty on Liver Transplant Outcomes in Older Adults with Hepatocellular CarcinomaK24AG080021 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer C. Lai · 2023 to 2026
$755k
A pragmatic RCT to evaluate the effect of CirrhosisRx, a novel clinical decision support system, versus usual care on guideline-adherence and clinical outcomes for patients with cirrhosisK23DK139455 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jin Ge · 2024 to 2026
$569k
NCATS NIH HHS KL2 TR001870NCATS NIH HHS UL1 TR001872NIA NIH HHS K24 AG080021NIA NIH HHS P30 AG044281NIA NIH HHS R01 AG059183NIDDK NIH HHS K23 DK139455NIDDK NIH HHS P30 DK026743
6 · The paper itself

Abstract

BACKGROUND AND

aimsLarge language models (LLMs) have significant capabilities in clinical information processing tasks. Commercially available LLMs, however, are not optimized for clinical uses and are prone to generating hallucinatory information. Retrieval-augmented generation (RAG) is an enterprise architecture that allows the embedding of customized data into LLMs. This approach "specializes" the LLMs and is thought to reduce hallucinations. APPROACH AND

resultsWe developed "LiVersa," a liver disease-specific LLM, by using our institution's protected health information-complaint text embedding and LLM platform, "Versa." We conducted RAG on 30 publicly available American Association for the Study of Liver Diseases guidance documents to be incorporated into LiVersa. We evaluated LiVersa's performance by conducting 2 rounds of testing. First, we compared LiVersa's outputs versus those of trainees from a previously published knowledge assessment. LiVersa answered all 10 questions correctly. Second, we asked 15 hepatologists to evaluate the outputs of 10 hepatology topic questions generated by LiVersa, OpenAI's ChatGPT 4, and Meta's Large Language Model Meta AI 2. LiVersa's outputs were more accurate but were rated less comprehensive and safe compared to those of ChatGPT 4.

resultsWe evaluated LiVersa's performance by conducting 2 rounds of testing. First, we compared LiVersa's outputs versus those of trainees from a previously published knowledge assessment. LiVersa answered all 10 questions correctly. Second, we asked 15 hepatologists to evaluate the outputs of 10 hepatology topic questions generated by LiVersa, OpenAI's ChatGPT 4, and Meta's Large Language Model Meta AI 2. LiVersa's outputs were more accurate but were rated less comprehensive and safe compared to those of ChatGPT 4.

conclusionsIn this demonstration, we built disease-specific and protected health information-compliant LLMs using RAG. While LiVersa demonstrated higher accuracy in answering questions related to hepatology, there were some deficiencies due to limitations set by the number of documents used for RAG. LiVersa will likely require further refinement before potential live deployment. The LiVersa prototype, however, is a proof of concept for utilizing RAG to customize LLMs for clinical use cases.

Indexed as

Liver DiseasesHumansInformation Storage and RetrievalNatural Language Processing

Identifiers

PMID38451962
PMCPMC11706764

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.