Evidence map›Paper›PMID 38451946›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Elucidating the role of water in collagen self-assembly by isotopically modulating collagen hydration.

Giulia Giubertoni, Liru Feng, Kevin Klein, Guido Giannetti, Luco Rutten, Yeji Choi, Anouk van der Net, Gerard Castro-Linares, Federico Caporaletti, Dimitra Micha and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 5 countries.

Giulia GiubertoniVan 't Hoff Institute for Molecular Sciences, Department of Molecular Photonics, University of Amsterdam, Amsterdam 1090 GD, The Netherlands.ORCID 0000-0002-3417-4987
Liru FengVan 't Hoff Institute for Molecular Sciences, Department of Molecular Photonics, University of Amsterdam, Amsterdam 1090 GD, The Netherlands.
Kevin KleinInstitute of Science and Technology Austria, Division of Mathematical and Physical Sciences, Klosterneuburg 3400, Austria.ORCID 0000-0002-0047-2994
Guido GiannettiVan 't Hoff Institute for Molecular Sciences, Department of Molecular Photonics, University of Amsterdam, Amsterdam 1090 GD, The Netherlands.ORCID 0009-0001-3612-5505
Luco RuttenElectron Microscopy Center, Radboud Technology Center Microscopy, Department of Medical BioSciences, Radboud University Medical Center, Nijmegen 6525 GA, The Netherlands.
Yeji ChoiMax Planck Institute for Polymer Research, Molecular Spectroscopy Department, Mainz 55128, Germany.
Anouk van der NetDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft 2628 HZ, The Netherlands.
Gerard Castro-LinaresDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft 2628 HZ, The Netherlands.
Federico CaporalettiVan 't Hoff Institute for Molecular Sciences, Department of Molecular Photonics, University of Amsterdam, Amsterdam 1090 GD, The Netherlands.
Dimitra MichaAmsterdam University Medical Centers, Human Genetics Department, Vrije Universiteit, Amsterdam 1007 MB, The Netherlands.
Johannes HungerMax Planck Institute for Polymer Research, Molecular Spectroscopy Department, Mainz 55128, Germany.ORCID 0000-0002-4419-5220
Antoine DeblaisVan der Waals-Zeeman Institute, Institute of Physics, University of Amsterdam, Amsterdam 1090 GL, The Netherlands.ORCID 0000-0002-3574-2480
Daniel BonnVan der Waals-Zeeman Institute, Institute of Physics, University of Amsterdam, Amsterdam 1090 GL, The Netherlands.ORCID 0000-0001-8925-1997
Nico SommerdijkElectron Microscopy Center, Radboud Technology Center Microscopy, Department of Medical BioSciences, Radboud University Medical Center, Nijmegen 6525 GA, The Netherlands.ORCID 0000-0002-8956-195X
Andela ŠarićInstitute of Science and Technology Austria, Division of Mathematical and Physical Sciences, Klosterneuburg 3400, Austria.ORCID 0000-0002-7854-2139
Ioana M IlieVan 't Hoff Institute for Molecular Sciences, Department of Molecular Photonics, University of Amsterdam, Amsterdam 1090 GD, The Netherlands.ORCID 0000-0002-5935-3332
Gijsje H KoenderinkDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft 2628 HZ, The Netherlands.ORCID 0000-0002-7823-8807
Sander WoutersenVan 't Hoff Institute for Molecular Sciences, Department of Molecular Photonics, University of Amsterdam, Amsterdam 1090 GD, The Netherlands.
Institute for Atomic and Molecular Physics · NLDelft University of Technology · NLInstitute of Science and Technology Austria · ATMax Planck Institute for Polymer Research · DERadboud University Nijmegen · NLUniversity of Amsterdam · NLAmsterdam University Medical Centers · NL

Funding

Ministerie van Onderwijs, Cultuur en Wetenschap (OCW) 024.003.019Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) OCENW.GROOT.2019.022Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) V1.Veni.212.240
6 · The paper itself

Abstract

Water is known to play an important role in collagen self-assembly, but it is still largely unclear how water-collagen interactions influence the assembly process and determine the fibril network properties. Here, we use the H[Formula: see text]O/D[Formula: see text]O isotope effect on the hydrogen-bond strength in water to investigate the role of hydration in collagen self-assembly. We dissolve collagen in H[Formula: see text]O and D[Formula: see text]O and compare the growth kinetics and the structure of the collagen assemblies formed in these water isotopomers. Surprisingly, collagen assembly occurs ten times faster in D[Formula: see text]O than in H[Formula: see text]O, and collagen in D[Formula: see text]O self-assembles into much thinner fibrils, that form a more inhomogeneous and softer network, with a fourfold reduction in elastic modulus when compared to H[Formula: see text]O. Combining spectroscopic measurements with atomistic simulations, we show that collagen in D[Formula: see text]O is less hydrated than in H[Formula: see text]O. This partial dehydration lowers the enthalpic penalty for water removal and reorganization at the collagen-water interface, increasing the self-assembly rate and the number of nucleation centers, leading to thinner fibrils and a softer network. Coarse-grained simulations show that the acceleration in the initial nucleation rate can be reproduced by the enhancement of electrostatic interactions. These results show that water acts as a mediator between collagen monomers, by modulating their interactions so as to optimize the assembly process and, thus, the final network properties. We believe that isotopically modulating the hydration of proteins can be a valuable method to investigate the role of water in protein structural dynamics and protein self-assembly.

Indexed as

CollagenWaterHydrogenThermodynamicsCollagenHydrogenWatercollagen tissuehydrationmechanicsmolecular structure

Identifiers

PMID38451946
PMCPMC10945838
OpenAlexW4392545121

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.