Evidence map›Paper›PMID 38451342›Full record

ArticleArchives of virology2024

Genomic diversity of group A rotaviruses from wild boars and domestic pigs in Japan: wide prevalence of NSP5 carrying the H2 genotype.

Shigeki Shizawa, Fujiko Fukuda, Yasuhiro Kikkawa, Toru Oi, Hitoshi Takemae, Tsuneyuki Masuda, Hiroho Ishida, Hironobu Murakami, Shoichi Sakaguchi, Tetsuya Mizutani and 2 more

Abstract read
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In one paragraph

Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Shigeki ShizawaSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.
Fujiko FukudaIshikawa Nanbu Livestock Hygiene Service Center, Kanazawa, Ishikawa, 920-3101, Japan.
Yasuhiro KikkawaGlobal Pig Farm, Inc., Shibukawa, Gunma, 377-0052, Japan.
Toru OiFaculty of Bioresources and Environmental Science, Ishikawa Prefectural University, Nonoichi, Ishikawa, 921-8836, Japan.
Hitoshi TakemaeCenter for infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
Tsuneyuki MasudaFaculty of Veterinary Medicine, Okayama University of Science, Imabari, Ehime, 794-0085, Japan.
Hiroho IshidaSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.
Hironobu MurakamiSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.
Shoichi SakaguchiDepartment of Microbiology and Infection Control, Faculty of Medicine, Osaka Medical and Pharmaceutical University, Osaka, 569-8686, Japan.
Tetsuya MizutaniCenter for infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
Makoto NagaiSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.
Mami ObaSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan. mamioba@go.tuat.ac.jp.ORCID http://orcid.org/0000-0002-4187-3217

Funding

JSPS KAKENHI 21K05947
6 · The paper itself

Abstract

Group A rotavirus (RVA) sequences were detected in 10.8% (23/212) and 20.7% (87/421) of fecal samples collected in 2017-2022 from wild boars and domestic pigs, using next-generation sequencing. Complete genome sequence analysis of one wild boar and 13 domestic pig RVAs revealed that six of them carried the rare H2 NSP5 genotype. Out of the 39 samples for which the NSP5 genotype could be determined, 23 (59.0%) were of genotype H2. H2 porcine RVAs consist exclusively of Japanese porcine RVAs and exhibit sequence diversity in each segment, suggesting that H2 porcine RVAs may have evolved through reassortment within the Japanese pig population.

Indexed as

RotavirusSus scrofaAnimalsGenomicsGenotypeJapanPrevalenceSwine

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.