Evidence map›Paper›PMID 38448926›Full record

ArticleVirology journal2024

Bacterial isolation and genome analysis of a novel Klebsiella quasipneumoniae phage in southwest China's karst area.

Yanju Liu, Jinfeng Wang, Ruoyu Zhao, Xiaoping Liu, Yang Dong, Wenyu Shi, Hongchen Jiang, Xiangyu Guan

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Article in Virology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed
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1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Yanju LiuSchool of Ocean Sciences, China University of Geosciences (Beijing), No. 29 Xueyuan Road, Haidian District, 100083, Beijing, China.
Jinfeng WangCollege of Food Science & Nutritional Engineering, China Agricultural University, 100083, Beijing, China.
Ruoyu ZhaoSchool of Ocean Sciences, China University of Geosciences (Beijing), No. 29 Xueyuan Road, Haidian District, 100083, Beijing, China.
Xiaoping LiuSchool of Ocean Sciences, China University of Geosciences (Beijing), No. 29 Xueyuan Road, Haidian District, 100083, Beijing, China.
Yang DongSchool of Ocean Sciences, China University of Geosciences (Beijing), No. 29 Xueyuan Road, Haidian District, 100083, Beijing, China.
Wenyu ShiCollege of Food Science & Nutritional Engineering, China Agricultural University, 100083, Beijing, China.
Hongchen JiangSchool of Ocean Sciences, China University of Geosciences (Beijing), No. 29 Xueyuan Road, Haidian District, 100083, Beijing, China.
Xiangyu GuanSchool of Ocean Sciences, China University of Geosciences (Beijing), No. 29 Xueyuan Road, Haidian District, 100083, Beijing, China. guanxy@cugb.edu.cn.

Funding

National Natural Science Foundation of China No. 42172336
6 · The paper itself

Abstract

backgroundSouthwest China is one of the largest karst regions in the world. Karst environment is relatively fragile and vulnerable to human activities. Due to the discharge of sewage and domestic garbage, the karst system may be polluted by pathogenic bacteria. The detection of bacterial distribution and identification of phage capable of infecting them is an important approach for environmental assessment and resource acquisition.

methodsBacteria and phages were isolated from karst water in southwest China using the plate scribing and double plate method, respectively. Isolated phage was defined by transmission electron microscopy, one-step growth curve and optimal multiplicity of infection (MOI). Genomic sequencing, phylogenetic analysis, comparative genomic and proteomic analysis were performed.

resultsA Klebsiella quasipneumoniae phage was isolated from 32 isolates and named KL01. KL01 is morphologically identified as Caudoviricetes with an optimal MOI of 0.1, an incubation period of 10 min, and a lysis period of 60 min. The genome length of KL01 is about 45 kb, the GC content is 42.5%, and it contains 59 open reading frames. The highest average nucleotide similarity between KL01 and a known Klebsiella phage 6939 was 83.04%.

conclusionsKL01 is a novel phage, belonging to the Autophagoviridae, which has strong lytic ability. This study indicates that there were not only some potential potentially pathogenic bacteria in the karst environment, but also phage resources for exploration and application.

Indexed as

BacteriophagesBacteriaChinaHumansKlebsiellaPhylogenyProteomicsAutophagoviridaeBacterial isolationGenomeKarstKlebsiella phage

Identifiers

PMID38448926
PMCPMC10916049

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.