Evidence map›Paper›PMID 38448734›Full record

ArticleNature chemical biology2024

Mitochondrial ATP generation is more proteome efficient than glycolysis.

Yihui Shen, Hoang V Dinh, Edward R Cruz, Zihong Chen, Caroline R Bartman, Tianxia Xiao, Catherine M Call, Rolf-Peter Ryseck, Jimmy Pratas, Daniel Weilandt and 13 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
23.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Mitochondria-Damaging Self-Reporting Probe for Cancer Therapy.Angewandte Chemie (International ed. in English) · 2026
    Article
  5. Metabolomics ofbioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Review
  20. Oxidative pentose phosphate pathway is required for T cell activation and antitumor immunity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 4 institutions in 1 country.

Yihui ShenDepartment of Chemistry, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0001-8490-6413
Hoang V DinhDepartment of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0002-3861-357X
Edward R CruzLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Zihong ChenDepartment of Chemistry, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0002-1554-1649
Caroline R BartmanDepartment of Chemistry, Princeton University, Princeton, NJ, USA.
Tianxia XiaoDepartment of Chemistry, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0003-2324-7949
Catherine M CallDepartment of Chemistry, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0002-2719-2482
Rolf-Peter RyseckDepartment of Chemistry, Princeton University, Princeton, NJ, USA.
Jimmy PratasDepartment of Chemistry, Princeton University, Princeton, NJ, USA.
Daniel WeilandtDepartment of Chemistry, Princeton University, Princeton, NJ, USA.
Heide BaronLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Arjuna SubramanianLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Zia FatmaCarl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Zong-Yen WuUS Department of Energy Joint Genome Institute and Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Sudharsan DwaraknathUS Department of Energy Joint Genome Institute and Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
John I HendryDepartment of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA.
Vinh G TranCarl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Lifeng YangDepartment of Chemistry, Princeton University, Princeton, NJ, USA.
Yasuo YoshikuniUS Department of Energy Joint Genome Institute and Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-8372-640X
Huimin ZhaoCarl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.ORCID http://orcid.org/0000-0002-9069-6739
Costas D MaranasDepartment of Chemical Engineering, The Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0002-1508-1398
Martin WührLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA. wuhr@princeton.edu.ORCID http://orcid.org/0000-0002-0244-8947
Joshua D RabinowitzDepartment of Chemistry, Princeton University, Princeton, NJ, USA. joshr@princeton.edu.ORCID http://orcid.org/0000-0002-1247-4727
Princeton University · USLawrence Berkeley National Laboratory · USPennsylvania State University · USUniversity of Illinois Urbana-Champaign · US

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Tracie Saunders · 1997 to 2026
$94.5M
Development of New Proteomics Technology and its Application to Study Cellular OrganizationR35GM128813 · NIGMS · PRINCETON UNIVERSITY · PI Martin Wühr · 2018 to 2026
$4.0M
Measuring and manipulating metabolic fluxes in the tumor microenvironmentK99CA273517 · NCI · PRINCETON UNIVERSITY · PI BARTMAN, CAROLINE · 2022 to 2022
$129k
NCI NIH HHS K99 CA273517NCI NIH HHS P30 CA072720NIGMS NIH HHS R35 GM128813U.S. Department of Energy (DOE) DE-SC0018260U.S. Department of Energy (DOE) DE-SC0018420U.S. Department of Health & Human Services | National Institutes of Health (NIH) 35GM128813U.S. Department of Health & Human Services | National Institutes of Health (NIH) K99CA273517U.S. Department of Health & Human Services | National Institutes of Health (NIH) P30CA072720
6 · The paper itself

Abstract

Metabolic efficiency profoundly influences organismal fitness. Nonphotosynthetic organisms, from yeast to mammals, derive usable energy primarily through glycolysis and respiration. Although respiration is more energy efficient, some cells favor glycolysis even when oxygen is available (aerobic glycolysis, Warburg effect). A leading explanation is that glycolysis is more efficient in terms of ATP production per unit mass of protein (that is, faster). Through quantitative flux analysis and proteomics, we find, however, that mitochondrial respiration is actually more proteome efficient than aerobic glycolysis. This is shown across yeast strains, T cells, cancer cells, and tissues and tumors in vivo. Instead of aerobic glycolysis being valuable for fast ATP production, it correlates with high glycolytic protein expression, which promotes hypoxic growth. Aerobic glycolytic yeasts do not excel at aerobic growth but outgrow respiratory cells during oxygen limitation. We accordingly propose that aerobic glycolysis emerges from cells maintaining a proteome conducive to both aerobic and hypoxic growth.

Indexed as

Adenosine TriphosphateGlycolysisMitochondriaProteomeAerobiosisAnimalsHumansMiceProteomicsSaccharomyces cerevisiaeAdenosine TriphosphateProteome

Identifiers

PMID38448734
PMCPMC11925356
OpenAlexW4392517995

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.