Evidence map›Paper›PMID 38448672›Full record

ArticleThe EMBO journal2024

Structural basis for RAD18 regulation by MAGEA4 and its implications for RING ubiquitin ligase binding by MAGE family proteins.

Simonne Griffith-Jones, Lucía Álvarez, Urbi Mukhopadhyay, Sarah Gharbi, Mandy Rettel, Michael Adams, Janosch Hennig, Sagar Bhogaraju

Open access · diamondAbstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Simonne Griffith-JonesEuropean Molecular Biology Laboratory, 71 Avenue des Martyrs, 38042, Grenoble, France.ORCID http://orcid.org/0009-0003-2220-6704
Lucía Álvarez *European Molecular Biology Laboratory, Meyerhofstraße 1, 69117, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-1437-5773
Urbi Mukhopadhyay *European Molecular Biology Laboratory, 71 Avenue des Martyrs, 38042, Grenoble, France.
Sarah GharbiEuropean Molecular Biology Laboratory, 71 Avenue des Martyrs, 38042, Grenoble, France.ORCID http://orcid.org/0009-0008-4792-9411
Mandy RettelEuropean Molecular Biology Laboratory, Meyerhofstraße 1, 69117, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-8304-3385
Michael AdamsEuropean Molecular Biology Laboratory, 71 Avenue des Martyrs, 38042, Grenoble, France.
Janosch HennigEuropean Molecular Biology Laboratory, Meyerhofstraße 1, 69117, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-5214-7002
Sagar BhogarajuEuropean Molecular Biology Laboratory, 71 Avenue des Martyrs, 38042, Grenoble, France. bhogaraju@embl.fr.ORCID http://orcid.org/0000-0001-9998-5927
European Molecular Biology Laboratory · FREuropean Molecular Biology Laboratory · DE

Funding

Agence Nationale de la Recherche (ANR) ANR-21-CE11-0013French Infrastructure for Integrated Structural Biology (FRISBI) ANR-10-INBS-0005-02Université Grenoble Alpes (UGA) ANR-17-EURE-0003
6 · The paper itself

Abstract

MAGEA4 is a cancer-testis antigen primarily expressed in the testes but aberrantly overexpressed in several cancers. MAGEA4 interacts with the RING ubiquitin ligase RAD18 and activates trans-lesion DNA synthesis (TLS), potentially favouring tumour evolution. Here, we employed NMR and AlphaFold2 (AF) to elucidate the interaction mode between RAD18 and MAGEA4, and reveal that the RAD6-binding domain (R6BD) of RAD18 occupies a groove in the C-terminal winged-helix subdomain of MAGEA4. We found that MAGEA4 partially displaces RAD6 from the RAD18 R6BD and inhibits degradative RAD18 autoubiquitination, which could be countered by a competing peptide of the RAD18 R6BD. AlphaFold2 and cross-linking mass spectrometry (XL-MS) also revealed an evolutionary invariant intramolecular interaction between the catalytic RING and the DNA-binding SAP domains of RAD18, which is essential for PCNA mono-ubiquitination. Using interaction proteomics, we found that another Type-I MAGE, MAGE-C2, interacts with the RING ubiquitin ligase TRIM28 in a manner similar to the MAGEA4/RAD18 complex, suggesting that the MAGEA4 peptide-binding groove also serves as a ligase-binding cleft in other type-I MAGEs. Our data provide new insights into the mechanism and regulation of RAD18-mediated PCNA mono-ubiquitination.

Indexed as

Ubiquitin-Conjugating EnzymesUbiquitin-Protein LigasesDNA DamagePeptidesProliferating Cell Nuclear AntigenUbiquitinUbiquitinationPeptidesProliferating Cell Nuclear AntigenUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesMAGEA4RAD18RAD6Trans-lesion DNA SynthesisUbiquitin

Identifiers

PMID38448672
PMCPMC10987633
OpenAlexW4392508436

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.