Evidence map›Paper›PMID 38448615›Full record

ArticleNature metabolism2024

Regulation of urea cycle by reversible high-stoichiometry lysine succinylation.

Ran Zhang, Jingqi Fang, Xueshu Xie, Chris Carrico, Jesse G Meyer, Lei Wei, Joanna Bons, Jacob Rose, Rebeccah Riley, Ryan Kwok and 9 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature metabolism, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  10. Posttranslational Regulation of Mammalian Sulfur Amino Acid Metabolism.International journal of molecular sciences · 2025
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 2 countries.

Ran Zhang *Buck Institute for Research on Aging, Novato, CA, USA.ORCID http://orcid.org/0000-0003-3376-6945
Jingqi Fang *Buck Institute for Research on Aging, Novato, CA, USA.ORCID http://orcid.org/0000-0002-5733-4373
Xueshu XieBuck Institute for Research on Aging, Novato, CA, USA.
Chris CarricoBuck Institute for Research on Aging, Novato, CA, USA.
Jesse G MeyerBuck Institute for Research on Aging, Novato, CA, USA.
Lei WeiBuck Institute for Research on Aging, Novato, CA, USA.
Joanna BonsBuck Institute for Research on Aging, Novato, CA, USA.ORCID http://orcid.org/0000-0002-1110-4193
Jacob RoseBuck Institute for Research on Aging, Novato, CA, USA.
Rebeccah RileyBuck Institute for Research on Aging, Novato, CA, USA.ORCID http://orcid.org/0000-0002-5870-6837
Ryan KwokBuck Institute for Research on Aging, Novato, CA, USA.ORCID http://orcid.org/0000-0002-1850-6611
Prasanna Vadhana Ashok KumaarBuck Institute for Research on Aging, Novato, CA, USA.
Yini ZhangBuck Institute for Research on Aging, Novato, CA, USA.ORCID http://orcid.org/0000-0002-8345-9997
Olga BielskaBuck Institute for Research on Aging, Novato, CA, USA.
Wenjuan HeGladstone Institutes and University of California, San Francisco, San Francisco, CA, USA.
Yuya NishidaGladstone Institutes and University of California, San Francisco, San Francisco, CA, USA.
Xiaojing LiuDepartment of Pharmacology and Cancer Biology, Duke University School of Medicine, Durham, NC, USA.
Jason W LocasaleDepartment of Pharmacology and Cancer Biology, Duke University School of Medicine, Durham, NC, USA.ORCID http://orcid.org/0000-0002-7766-3502
Birgit SchillingBuck Institute for Research on Aging, Novato, CA, USA. bschilling@buckinstitute.org.ORCID http://orcid.org/0000-0001-9907-2749
Eric VerdinBuck Institute for Research on Aging, Novato, CA, USA. everdin@buckinstitute.org.ORCID http://orcid.org/0000-0003-3703-3183
Buck Institute for Research on Aging · USGladstone Institutes · USNorth Carolina State University · USCedars-Sinai Medical Center · US

Funding

REVERSIBLE MITOCHONDRIAL PROTEIN ACETYLATION AND METABOLIC REGULATIONR24DK085610 · NIDDK · J. DAVID GLADSTONE INSTITUTES · PI VERDIN, ERIC M. · 2010 to 2019
$16.0M
Training in Basic Research on Aging and Age-Related DiseaseT32AG000266 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Lisa M Ellerby · 1998 to 2026
$13.8M
Quantitative Proteomics to Develop Robust Senescence-Related Biomarkers for AgingU01AG060906 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI SCHILLING, BIRGIT · 2018 to 2022
$4.0M
TripleTOF 5600 High Resolution Mass SpectrometerS10OD016281 · OD · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2013 to 2013
$597k
National Natural Science Foundation of China (National Science Foundation of China) 82301607NIA NIH HHS T32 AG000266NIA NIH HHS U01 AG060906NIDDK NIH HHS R24 DK085610U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1S10OD016281U.S. Department of Health & Human Services | National Institutes of Health (NIH) T32AG000266U.S. Department of Health & Human Services | National Institutes of Health (NIH) T32GM8806U.S. Department of Health & Human Services | National Institutes of Health (NIH) U01AG060906U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) R24DK085610
6 · The paper itself

Abstract

The post-translational modification lysine succinylation is implicated in the regulation of various metabolic pathways. However, its biological relevance remains uncertain due to methodological difficulties in determining high-impact succinylation sites. Here, using stable isotope labelling and data-independent acquisition mass spectrometry, we quantified lysine succinylation stoichiometries in mouse livers. Despite the low overall stoichiometry of lysine succinylation, several high-stoichiometry sites were identified, especially upon deletion of the desuccinylase SIRT5. In particular, multiple high-stoichiometry lysine sites identified in argininosuccinate synthase (ASS1), a key enzyme in the urea cycle, are regulated by SIRT5. Mutation of the high-stoichiometry lysine in ASS1 to succinyl-mimetic glutamic acid significantly decreased its enzymatic activity. Metabolomics profiling confirms that SIRT5 deficiency decreases urea cycle activity in liver. Importantly, SIRT5 deficiency compromises ammonia tolerance, which can be reversed by the overexpression of wild-type, but not succinyl-mimetic, ASS1. Therefore, lysine succinylation is functionally important in ammonia metabolism.

Indexed as

LysineSirtuinsAmmoniaAnimalsMiceMice, KnockoutUreaAmmoniaLysineSirtuinsUrea

Identifiers

PMID38448615
PMCPMC12962437
OpenAlexW4392508432

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.