Evidence map›Paper›PMID 38448587›Full record

ArticleNature2024

Oxidative cyclization reagents reveal tryptophan cation-π interactions.

Xiao Xie, Patrick J Moon, Steven W M Crossley, Amanda J Bischoff, Dan He, Gen Li, Nam Dao, Angel Gonzalez-Valero, Audrey G Reeves, Jeffrey M McKenna and 4 more

Erratum issuedAbstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
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  9. Review
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  15. Article
  16. Cysteine reactivity profiling identifies host regulators ofbioRxiv : the preprint server for biology · 2025
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Xiao Xie *Department of Chemistry, University of California, Berkeley, Berkeley, CA, USA.
Patrick J Moon *Department of Chemistry, University of California, Berkeley, Berkeley, CA, USA.
Steven W M CrossleyDepartment of Chemistry, University of California, Berkeley, Berkeley, CA, USA.
Amanda J BischoffDepartment of Chemistry, University of California, Berkeley, Berkeley, CA, USA.
Dan HeDepartment of Chemistry, University of California, Berkeley, Berkeley, CA, USA.
Gen LiDepartment of Chemistry, University of California, Berkeley, Berkeley, CA, USA.
Nam DaoDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Angel Gonzalez-ValeroDepartment of Chemistry, University of California, Berkeley, Berkeley, CA, USA.ORCID 0000-0003-4341-7546
Audrey G ReevesDepartment of Chemistry, University of California, Berkeley, Berkeley, CA, USA.
Jeffrey M McKennaNovartis Institutes of Biomedical Research, Cambridge, MA, USA.ORCID 0000-0002-2978-5652
Susanna K ElledgeDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA, USA.
James A WellsDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0001-8267-5519
F Dean TosteDepartment of Chemistry, University of California, Berkeley, Berkeley, CA, USA. fdtoste@berkeley.edu.ORCID 0000-0001-8018-2198
Christopher J ChangDepartment of Chemistry, University of California, Berkeley, Berkeley, CA, USA. chrischang@berkeley.edu.ORCID 0000-0001-5732-9497

Funding

Molecular Imaging Probes To Study Redox BiologyR01GM079465 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Christopher J. Chang · 2006 to 2026
$7.8M
Univ of Calif Berkeley Chemistry-Biology Interface ProgramT32GM066698 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CHANG, CHRISTOPHER J., FRANCIS, MATTHEW B · 2004 to 2023
$7.5M
Methods for Selective Organic Synthesis based on Ionic CatalystsR35GM118190 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI F. Dean Toste · 2016 to 2026
$6.7M
Surfaceomic technologies and antibodies to probe cell surface proteomes and their interactomes at unprecedented small scale and high-resolutionR35GM122451 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JAMES A WELLS · 2017 to 2026
$5.3M
Chemical Probes to Study Formaldehyde BiologyR01ES028096 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Christopher J. Chang · 2017 to 2026
$4.1M
Research Training in Chemistry and Chemical BiologyT32GM145460 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jason E Gestwicki · 2022 to 2026
$3.1M
Chemical Probes to Study Methionine Redox BiologyR01GM139245 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Christopher J. Chang · 2020 to 2026
$2.9M
High Definition Ion Mobility SpectrometerS10OD020062 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI WILLIAMS, EVAN R · 2015 to 2015
$590k
Acquisition of a Cryoprobe and Related Accessories for a 600 MHz NMR Spectrometer to Support Health Research Activities at the University of California, BerkeleyS10OD024998 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARTWIG, JOHN F · 2018 to 2018
$265k
NIEHS NIH HHS R01 ES028096NIGMS NIH HHS R01 GM079465NIGMS NIH HHS R01 GM139245NIGMS NIH HHS R35 GM118190NIGMS NIH HHS R35 GM122451NIGMS NIH HHS T32 GM066698NIGMS NIH HHS T32 GM145460NIH HHS S10 OD020062NIH HHS S10 OD024998
6 · The paper itself

Abstract

Methods for selective covalent modification of amino acids on proteins can enable a diverse array of applications, spanning probes and modulators of protein function to proteomics

Indexed as

CationsCyclizationIndicators and ReagentsProteinsTryptophanClick ChemistryOxidation-ReductionPeptidesProteomeCationsIndicators and ReagentsPeptidesProteinsProteomeTryptophan

Identifiers

PMID38448587
PMCPMC11198740

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.