Evidence map›Paper›PMID 38448477›Full record

ArticleNature communications2024

Evidence for immune activation in pathogenesis of the HLA class II associated disease, podoconiosis.

Mikias Negash, Menberework Chanyalew, Tigist Girma, Fekadu Alemu, Diana Alcantara, Ben Towler, Gail Davey, Rosemary J Boyton, Daniel M Altmann, Rawleigh Howe and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Mikias NegashBrighton and Sussex Centre for Global Health Research, Department of Global Health and Infection, Brighton and Sussex Medical School, Brighton, UK. mikiasn2@gmail.com.ORCID 0000-0003-3868-4148
Menberework ChanyalewArmauer Hansen Research Institute, Addis Ababa, Ethiopia.
Tigist GirmaArmauer Hansen Research Institute, Addis Ababa, Ethiopia.
Fekadu AlemuArmauer Hansen Research Institute, Addis Ababa, Ethiopia.ORCID 0000-0003-3728-3545
Diana AlcantaraBrighton and Sussex Centre for Global Health Research, Department of Global Health and Infection, Brighton and Sussex Medical School, Brighton, UK.
Ben TowlerDepartment of Biochemistry and Biomedicine, School of Life Sciences, University of Sussex, Brighton, UK.ORCID 0000-0001-7884-1131
Gail DaveyBrighton and Sussex Centre for Global Health Research, Department of Global Health and Infection, Brighton and Sussex Medical School, Brighton, UK.
Rosemary J BoytonDepartment of Infectious Disease, Imperial College London, London, UK.ORCID 0000-0002-5608-0797
Daniel M AltmannDepartment of Immunology and Inflammation, Imperial College London, London, UK.ORCID 0000-0002-2436-6192
Rawleigh HoweArmauer Hansen Research Institute, Addis Ababa, Ethiopia.
Melanie J NewportBrighton and Sussex Centre for Global Health Research, Department of Global Health and Infection, Brighton and Sussex Medical School, Brighton, UK.ORCID 0000-0002-8946-7525
Armauer Hansen Research Institute · ETBrighton and Sussex Medical School · GBImperial College London · GBUniversity of Sussex · GB

Funding

DH | NIHR | Health Services Research Programme (NIHR Health Services Research Programme) GHR 16/136/29
6 · The paper itself

Abstract

Available evidences suggest that podoconiosis is triggered by long term exposure of bare feet to volcanic red clay soil particles. Previous genome-wide studies in Ethiopia showed association between the HLA class II region and disease susceptibility. However, functional relationships between the soil trigger, immunogenetic risk factors and the immunological basis of the disease are uncharted. Therefore, we aimed to characterise the immune profile and gene expression of podoconiosis patients relative to endemic healthy controls. Peripheral blood immunophenotyping of T cells indicated podoconiosis patients had significantly higher CD4 and CD8 T cell surface HLA-DR expression compared to healthy controls while CD62L expression was significantly lower. The levels of the activation markers CD40 and CD86 were significantly higher on monocytes and dendritic cell subsets in patients compared to the controls. RNA sequencing gene expression data indicated higher transcript levels for activation, scavenger receptors, and apoptosis markers while levels were lower for histones, T cell receptors, variable, and constant immunoglobulin chain in podoconiosis patients compared to healthy controls. Our finding provides evidence that podoconiosis is associated with high levels of immune activation and inflammation with over-expression of genes within the pro-inflammatory axis. This offers further support to a working hypothesis of podoconiosis as soil particle-driven, HLA-associated disease of immunopathogenic aetiology.

Indexed as

ElephantiasisCD40 AntigensCD8-Positive T-LymphocytesClayHistonesHumansCD40 AntigensClayHistones

Identifiers

PMID38448477
PMCPMC10917762
OpenAlexW4392514026

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.