Evidence map›Paper›PMID 38448399›Full record

ArticleNature communications2024

Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency.

Matthieu Haudiquet, Julie Le Bris, Amandine Nucci, Rémy A Bonnin, Pilar Domingo-Calap, Eduardo P C Rocha, Olaya Rendueles

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Differential virulence potential of different clades of multidrug-resistantmedRxiv : the preprint server for health sciences · 2026
    Article
  12. Connections betweenInfection and immunity · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Bacteriophage Therapy AgainstMicroorganisms · 2026
    Review
  18. The acquisition ofmBio · 2026
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Matthieu HaudiquetInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Microbial Evolutionary Genomics, Paris, 75015, France. matthieu.haudiquet@gmail.com.
Julie Le BrisInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Microbial Evolutionary Genomics, Paris, 75015, France.ORCID 0009-0003-5500-0657
Amandine NucciInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Microbial Evolutionary Genomics, Paris, 75015, France.
Rémy A BonninTeam Resist UMR1184 Université Paris Saclay, CEA, Inserm, Le Kremlin-Bicêtre, Paris, France.ORCID 0000-0002-2307-3232
Pilar Domingo-CalapInstituto de Biología Integrativa de Sistemas, Universitat de València-CSIC, 46980, Paterna, Spain.ORCID 0000-0003-2829-8809
Eduardo P C Rocha *Institut Pasteur, Université Paris Cité, CNRS UMR3525, Microbial Evolutionary Genomics, Paris, 75015, France. eduardo.rocha@pasteur.fr.ORCID 0000-0001-7704-822X
Olaya Rendueles *Institut Pasteur, Université Paris Cité, CNRS UMR3525, Microbial Evolutionary Genomics, Paris, 75015, France. olaya.rendueles-garcia@pasteur.fr.ORCID 0000-0002-6648-1594

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-10-LABX-62- IBEIDAgence Nationale de la Recherche (French National Research Agency) ANR 16 CE15 0022 03 PREDIRESAgence Nationale de la Recherche (French National Research Agency) ANR 18 CE12 0001 01 ENCAPSULATIONAgence Nationale de la Recherche (French National Research Agency) PIA/ANR-16- CONV-0005Fondation pour la Recherche Médicale (Foundation for Medical Research in France) EQU201903007835
6 · The paper itself

Abstract

Bacterial evolution is affected by mobile genetic elements like phages and conjugative plasmids, offering new adaptive traits while incurring fitness costs. Their infection is affected by the bacterial capsule. Yet, its importance has been difficult to quantify because of the high diversity of confounding mechanisms in bacterial genomes such as anti-viral systems and surface receptor modifications. Swapping capsule loci between Klebsiella pneumoniae strains allowed us to quantify their impact on plasmid and phage infection independently of genetic background. Capsule swaps systematically invert phage susceptibility, revealing serotypes as key determinants of phage infection. Capsule types also influence conjugation efficiency in both donor and recipient cells, a mechanism shaped by capsule volume and conjugative pilus structure. Comparative genomics confirmed that more permissive serotypes in the lab correspond to the strains acquiring more conjugative plasmids in nature. The least capsule-sensitive pili (F-like) are the most frequent in the species' plasmids, and are the only ones associated with both antibiotic resistance and virulence factors, driving the convergence between virulence and antibiotics resistance in the population. These results show how traits of cellular envelopes define slow and fast lanes of infection by mobile genetic elements, with implications for population dynamics and horizontal gene transfer.

Indexed as

BacteriophagesGenome, BacterialPhenotypePlasmidsSerogroup

Identifiers

PMID38448399
PMCPMC10918111

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.