Evidence map›Paper›PMID 38448163›Full record

ArticleThe Journal of cell biology2024

The derlin Dfm1 couples retrotranslocation of a folded protein domain to its proteasomal degradation.

Daniela G Vitali, Daniel Fonseca, Pedro Carvalho

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Competition between Der1 and ERAD-M substrates controls Hrd1 complex function.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Daniela G Vitali *Sir William Dunn School of Pathology, University of Oxford, Oxford, UK.ORCID 0000-0003-4468-1066
Daniel Fonseca *Sir William Dunn School of Pathology, University of Oxford, Oxford, UK.ORCID 0000-0003-0434-6466
Pedro CarvalhoSir William Dunn School of Pathology, University of Oxford, Oxford, UK.ORCID 0000-0002-9691-5277
University of Oxford · GB

Funding

European Research Council 817708Wellcome TrustWellcome Trust 223153/Z/21/Z
6 · The paper itself

Abstract

Endoplasmic reticulum (ER) proteins are degraded by proteasomes in the cytosol through ER-associated degradation (ERAD). This process involves the retrotranslocation of substrates across the ER membrane, their ubiquitination, and membrane extraction by the Cdc48/Npl4/Ufd1 ATPase complex prior to delivery to proteasomes for degradation. How the presence of a folded luminal domain affects substrate retrotranslocation and this event is coordinated with subsequent ERAD steps remains unknown. Here, using a model substrate with a folded luminal domain, we showed that Cdc48 ATPase activity is sufficient to drive substrate retrotranslocation independently of ERAD membrane components. However, the complete degradation of the folded luminal domain required substrate-tight coupling of retrotranslocation and proteasomal degradation, which was ensured by the derlin Dfm1. Mutations in Dfm1 intramembrane rhomboid-like or cytosolic Cdc48-binding regions resulted in partial degradation of the substrate with accumulation of its folded domain. Our study revealed Dfm1 as a critical regulator of Cdc48-driven retrotranslocation and highlights the importance of coordinating substrate retrotranslocation and degradation during ERAD.

Indexed as

Endoplasmic ReticulumMembrane ProteinsProteasome Endopeptidase ComplexSaccharomyces cerevisiae ProteinsAdenosine TriphosphatasesCytosolEndoplasmic Reticulum-Associated DegradationProtein DomainsAdenosine TriphosphatasesDfm1 protein, S cerevisiaeMembrane ProteinsProteasome Endopeptidase ComplexSaccharomyces cerevisiae Proteins

Identifiers

PMID38448163
PMCPMC11066878
OpenAlexW4392504944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.