Evidence map›Paper›PMID 38446776›Full record

ArticlePloS one2024

Otariid gammaherpesvirus 1 in South American fur seals (Arctocephalus australis) and a novel related herpesvirus in free-ranging South American sea lions (Otaria byronia): Prevalence and effects of age, sex, and sample type.

Karisa N Tang, Michael J Adkesson, Susana Cárdenas-Alayza, Laura Adamovicz, Alissa C Deming, James F X Wellehan, April Childress, Galaxia Cortes-Hinojosa, Kathleen Colegrove, Jennifer N Langan and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 97% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 3 countries.

Karisa N TangChicago Zoological Society, Brookfield Zoo, Brookfield, IL, United States of America.
Michael J AdkessonChicago Zoological Society, Brookfield Zoo, Brookfield, IL, United States of America.ORCID 0000-0002-8766-5296
Susana Cárdenas-AlayzaCentro para la Sostenibilidad Ambiental, Universidad Peruana Cayetano Heredia, Lima, Peru.
Laura AdamoviczWildlife Epidemiology Laboratory, University of Illinois College of Veterinary Medicine, Urbana, IL, United States of America.ORCID 0000-0002-5696-2327
Alissa C DemingPacific Marine Mammal Center, Laguna Beach, CA, United States of America.
James F X WellehanDepartment of Comparative, Diagnostic, and Population Medicine, College of Veterinary Medicine, University of Florida, Gainesville, FL, United States of America.
April ChildressDepartment of Comparative, Diagnostic, and Population Medicine, College of Veterinary Medicine, University of Florida, Gainesville, FL, United States of America.
Galaxia Cortes-HinojosaEscuela de Medicina Veterinaria, Facultad de Agronomía e Ingeniería Forestal, Facultad de Ciencias Biológicas y Facultad de Medicina, Pontificia Universidad Católica de Chile, Santiago, Chile.ORCID 0000-0002-6160-9093
Kathleen ColegroveZoological Pathology Program, Veterinary Diagnostic Laboratory, College of Veterinary Medicine, University of Illinois, Brookfield, IL, United States of America.
Jennifer N LanganChicago Zoological Society, Brookfield Zoo, Brookfield, IL, United States of America.
Matthew C AllenderChicago Zoological Society, Brookfield Zoo, Brookfield, IL, United States of America.ORCID 0000-0001-9067-1964
University of Illinois Urbana-Champaign · USUniversity of Florida · USChicago Zoological Society · USMarine Mammal Center · USPontificia Universidad Católica de Chile · CLUniversidad Peruana Cayetano Heredia · PEUrbana University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Otariid gammaherpesvirus 1 (OtGHV1) is associated with high rates of urogenital carcinoma in free-ranging California sea lions (Zalophus californianus; CSL), and until recently was reported only in the Northern Hemisphere. The objective of this study was to survey free-ranging South American sea lions (Otaria byronia; SASL) and South American fur seals (Arctocephalus australis: SAFS) in Punta San Juan, Peru for OtGHV1 and to determine prevalence characteristics. Twenty-one percent (14/67) of urogenital swabs collected over three years (2011, 2014, 2015) from live pinnipeds of both species tested positive with a pan-herpesvirus conventional PCR. Sequencing of SAFS amplicons revealed 100% homology to OtGHV1 at the DNA polymerase, glycoprotein B, and viral bcl2-like genes. Sequencing of SASL amplicons revealed a novel related virus, herein called Otariid gammaherpesvirus 8 (OtGHV8). For comparison of sample sites, urogenital, conjunctival, and oropharyngeal swabs collected from 136 live pinnipeds of both species at Punta San Juan between 2011-2018 were then assayed using quantitative PCR for a segment of the OtGHV1/8 DNA polymerase gene using a qPCR assay now determined to cross-react between the two viruses. In total, across both species, 38.6% (51/132) of urogenital swabs, 5.6% (4/71) of conjunctival swabs, and 1.1% (1/90) of oropharyngeal swabs were positive for OtGHV1/8, with SASL only positive on urogenital swabs. Results from SASL were complicated by the finding of OtGHV8, necessitating further study to determine prevalence of OtGHV1 versus OtGHV8 using an alternate assay. Results from SAFS suggest a potential relationship between OtGHV1 in SAFS and CSL. Though necropsy surveillance in SAFS is very limited, geographic patterns of OtGHV1-associated urogenital carcinoma in CSL and the tendency of herpesviruses to cause more detrimental disease in aberrant hosts suggests that it is possible that SAFS may be the definitive host of OtGHV1, which gives further insight into the diversity and phyogeography of this clade of related gammaherpesviruses.

Indexed as

CaniformiaCarcinomaFur SealsGammaherpesvirinaeHerpesviridaeSea LionsAnimalsDNA-Directed DNA PolymeraseHumansPeruPrevalenceDNA-Directed DNA Polymerase

Identifiers

PMID38446776
PMCPMC10917305
OpenAlexW4392503682

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.