Evidence map›Paper›PMID 38446015›Full record

ArticleMicrobial genomics2024

A metagenomic investigation of phytoplasma diversity in Australian vegetable growing regions.

Bianca Rodrigues Jardim, Cherie Gambley, Lucy T T Tran-Nguyen, Craig Webster, Monica Kehoe, Wycliff M Kinoti, Samantha Bond, Richard Davis, Lynne Jones, Nandita Pathania and 4 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbial genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. International journal of systematic and evolutionary microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Bianca Rodrigues JardimSchool of Applied Systems Biology, La Trobe University, Bundoora, Victoria, Australia.
Cherie GambleyHorticulture and Forestry Science, Department of Agriculture and Fisheries Maroochy Research Facility, Nambour, Queensland, Australia.
Lucy T T Tran-NguyenPlant Health Australia, Deakin, Australian Capital Territory, Australia.
Craig WebsterDiagnostic Laboratory Services, Department of Primary Industries and Regional Development, South Perth, Western Australia, Australia.
Monica KehoeDiagnostic Laboratory Services, Department of Primary Industries and Regional Development, South Perth, Western Australia, Australia.
Wycliff M KinotiAgriculture Victoria Research, Department of Energy, Environment and Climate Action, AgriBio, Bundoora, Victoria, Australia.
Samantha BondBiosecurity and Animal Welfare, Department of Industry, Tourism and Trade, Darwin, Northern Territory, Australia.
Richard DavisNorthern Australia Quarantine Strategy, Department of Agriculture, Fisheries and Forestry, Canberra, Australian Capital Territory, 2601, Australia.
Lynne JonesNorthern Australia Quarantine Strategy, Department of Agriculture, Fisheries and Forestry, Canberra, Australian Capital Territory, 2601, Australia.
Nandita PathaniaDepartment of Agriculture and Fisheries, Mareeba, Queensland, Australia.
Murray SharmanDepartment of Agriculture and Fisheries, Ecosciences Precinct, Dutton Park, Queensland 4102, Australia.
Toni ChapmanBiosecurity and Food Safety, New South Wales Department of Primary Industries, Elizabeth Macarthur Agricultural Institute (EMAI), Menangle, New South Wales, 2567, Australia.
Brendan C RodoniSchool of Applied Systems Biology, La Trobe University, Bundoora, Victoria, Australia.
Fiona E ConstableSchool of Applied Systems Biology, La Trobe University, Bundoora, Victoria, Australia.
La Trobe University · AUDepartment of Agriculture, Fisheries and ForestryDepartment of Primary Industries and Regional Development · AUACT GovernmentAgriculture Victoria · AUNew South Wales Department of Primary Industries · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, metagenomic sequence data was used to investigate the phytoplasma taxonomic diversity in vegetable-growing regions across Australia. Metagenomic sequencing was performed on 195 phytoplasma-positive samples, originating either from historic collections (

Indexed as

CoinfectionPhytoplasmaMetagenomeRNA, Ribosomal, 16SVegetablesVictoriaRNA, Ribosomal, 16SANICandidatus Phytoplasma australasiaticumCandidatus Phytoplasma stylosanthisdraft genomesmetagenomic assembled genomes (MAGs)unclassified phytoplasmas

Identifiers

PMID38446015
PMCPMC10999746
OpenAlexW4392506472

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.