Evidence map›Paper›PMID 38445990›Full record

ReviewChannels (Austin, Tex.)2024

Structural modeling of ion channels using AlphaFold2, RoseTTAFold2, and ESMFold.

Phuong Tran Nguyen, Brandon John Harris, Diego Lopez Mateos, Adriana Hernández González, Adam Michael Murray, Vladimir Yarov-Yarovoy

Abstract readReview
In one paragraph

Review in Channels (Austin, Tex.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Discovery of Therapeutic Antibodies Targeting Complex Multi-Spanning Membrane Proteins.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2024
    Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Phuong Tran NguyenDepartment of Physiology and Membrane Biology, University of California School of Medicine, Davis, CA, USA.
Brandon John HarrisDepartment of Physiology and Membrane Biology, University of California School of Medicine, Davis, CA, USA.
Diego Lopez MateosDepartment of Physiology and Membrane Biology, University of California School of Medicine, Davis, CA, USA.
Adriana Hernández GonzálezDepartment of Physiology and Membrane Biology, University of California School of Medicine, Davis, CA, USA.
Adam Michael MurrayMonterey Peninsula College, Monterey, CA, USA.
Vladimir Yarov-YarovoyDepartment of Physiology and Membrane Biology, University of California School of Medicine, Davis, CA, USA.ORCID 0000-0002-2325-4834

Funding

UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
In silico Safety PharmacologyR01HL128537 · NHLBI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CLANCY, COLLEEN E, SANTANA, LUIS F · 2016 to 2024
$5.7M
Lipid regulation of Cardiac Excitation-Contraction couplingR01HL159304 · NHLBI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI DIXON, ROSE ELLEN · 2022 to 2025
$2.4M
Investigating the contributions of voltage gated sodium channels to oxaliplatin induced neuropathyR61NS127285 · NINDS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI WULFF, HEIKE, YAROV-YAROVOY, VLADIMIR M · 2022 to 2022
$1.6M
NHLBI NIH HHS R01 HL128537NHLBI NIH HHS R01 HL159304NIGMS NIH HHS T32 GM007377NINDS NIH HHS R61 NS127285
6 · The paper itself

Abstract

Ion channels play key roles in human physiology and are important targets in drug discovery. The atomic-scale structures of ion channels provide invaluable insights into a fundamental understanding of the molecular mechanisms of channel gating and modulation. Recent breakthroughs in deep learning-based computational methods, such as AlphaFold, RoseTTAFold, and ESMFold have transformed research in protein structure prediction and design. We review the application of AlphaFold, RoseTTAFold, and ESMFold to structural modeling of ion channels using representative voltage-gated ion channels, including human voltage-gated sodium (Na

Indexed as

CalciumIon ChannelsHumansPotassiumCalciumIon ChannelsPotassiumAlphaFoldESMFoldRoseTTAFoldStructural modelingvoltage-gated calcium channelsvoltage-gated potassium chnanelsvoltage-gated sodium channels

Identifiers

PMID38445990
PMCPMC10936637

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.