Evidence map›Paper›PMID 38445872›Full record

ArticleMicrobiology spectrum2024

Microbiome-based classification models for fresh produce safety and quality evaluation.

Chao Liao, Luxin Wang, Gerald Quon

Abstract read
In one paragraph

Article in Microbiology spectrum, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Chao LiaoDepartment of Food Science and Technology, University of California Davis, Davis, California, USA.ORCID 0000-0003-0583-1965
Luxin WangDepartment of Food Science and Technology, University of California Davis, Davis, California, USA.ORCID 0000-0003-4959-6477
Gerald QuonDepartment of Molecular and Cellular Biology, University of California Davis, Davis, California, USA.ORCID 0000-0002-1716-0153

Funding

National Science Foundation (NSF) CAREER award 1846559UC Davis Innovative Data Science Seed Funding Program Grant
6 · The paper itself

Abstract

Small sample sizes and loss of sequencing reads during the microbiome data preprocessing can limit the statistical power of differentiating fresh produce phenotypes and prevent the detection of important bacterial species associated with produce contamination or quality reduction. Here, we explored a machine learning-based IMPORTANCE: Identification of generalizable indicators for produce safety (PS) and produce quality (PQ) improves the detection of produce contamination and quality decline. However, effective sequencing read loss during microbiome data preprocessing and the limited sample size of individual studies restrain statistical power to identify important features contributing to differentiating PS and PQ phenotypes. We applied machine learning-based models using individual and integrated

Indexed as

AlgorithmsMicrobiotaMachine Learningamplicon sequence variantk-mer hashmachine learningproduce qualityproduce safetyrandom forest

Identifiers

PMID38445872
PMCPMC10986475

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.