Evidence map›Paper›PMID 38445870›Full record

ArticlemSystems2024

Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables.

Min Yap, Orla O'Sullivan, Paul W O'Toole, Jeremiah J Sheehan, Mark A Fenelon, Paul D Cotter

Abstract read
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Detection and Isolation of PsychrotrophicFoods (Basel, Switzerland) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Min YapTeagasc Food Research Centre, Cork, Ireland.ORCID 0000-0002-0410-4611
Orla O'SullivanTeagasc Food Research Centre, Cork, Ireland.
Paul W O'TooleSchool of Microbiology, University College Cork, Cork, Ireland.
Jeremiah J SheehanTeagasc Food Research Centre, Cork, Ireland.
Mark A FenelonTeagasc Food Research Centre, Cork, Ireland.
Paul D CotterTeagasc Food Research Centre, Cork, Ireland.ORCID 0000-0002-5465-9068

Funding

Enterprise Ireland TC 2020 0028Science Foundation Ireland (SFI) 16/RC/3835
6 · The paper itself

Abstract

Season and location have previously been shown to be associated with differences in the microbiota of raw milk, especially in milk from pasture-based systems. Here, we further advance research in this area by examining differences in the raw milk microbiota from several locations across Ireland over 12 months, and by investigating microbiota associations with climatic variables and chemical composition. Shotgun metagenomic sequencing was used to investigate the microbiota of raw milk collected from nine locations ( IMPORTANCE: The microbiota of raw milk is influenced by many factors that encourage or prevent the introduction and growth of both beneficial and undesirable microorganisms. The seasonal and geographical impacts on the microbial communities of raw milk have been previously seen, but the relationships with environmental factors and the chemical composition has yet to be investigated. In this year-long study, we found that while raw milk is highly diverse, a core microbiota was detected for Irish raw milk, with strong evidence of seasonal and geographical influence. We also found associations between groups of microorganisms, environmental factors, and milk composition, which expand current knowledge on the relationships between microbial and chemical composition and the climate. These results provide evidence for the development of a tool to allow for the prediction of raw milk quality and safety.

Indexed as

MicrobiotaMilkAnimalsBacteriaFemaleMetagenomeSeasonsclimatemilk compositionmilk microbiotashotgun metagenomics

Identifiers

PMID38445870
PMCPMC11019797

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.