Evidence map›Paper›PMID 38444533›Full record

ArticleFrontiers in plant science2024

Plant virus diversity in bee and pollen samples from apple (

Malek Smadi, Eunseo Lee, James Phelan, Aiming Wang, Guillaume J Bilodeau, Stephen F Pernal, M Marta Guarna, Mike Rott, Jonathan S Griffiths

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Malek SmadiLondon Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada.
Eunseo LeeLondon Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada.
James PhelanCanadian Food Inspection Agency, Centre for Plant Health, Sidney Laboratory, North Saanich, BC, Canada.
Aiming WangLondon Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada.
Guillaume J BilodeauCanadian Food Inspection Agency, Ottawa Plant Laboratory, Ottawa, ON, Canada.
Stephen F PernalBeaverlodge Research Farm, Agriculture and Agri-Food Canada, Beaverlodge, AB, Canada.
M Marta GuarnaBeaverlodge Research Farm, Agriculture and Agri-Food Canada, Beaverlodge, AB, Canada.
Mike RottCanadian Food Inspection Agency, Centre for Plant Health, Sidney Laboratory, North Saanich, BC, Canada.
Jonathan S GriffithsLondon Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada.
Agriculture and Agri-Food Canada · CACanadian Food Inspection Agency · CALondon Research and Development CentreUniversity of Victoria · CAUniversity of Waterloo · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Honey bee ( Methods: Plant viruses were identified in total RNA extracted from bee and pollen samples, and compared with profiles from double stranded RNA extracted from leaf and flower tissues. CVA, PDV, PNRSV, and PVF coat protein nucleotide sequences were aligned and compared for phylogenetic analysis. Results: A wide array of plant viruses were identified in both systems, with cherry virus A (CVA), prune dwarf virus (PDV), prunus necrotic ringspot virus (PNRSV), and prunus virus F (PVF) most commonly detected. Citrus concave gum associated virus and apple stem grooving virus were only identified in samples collected during apple bloom, demonstrating changing viral profiles from the same site over time. Different profiles of viruses were identified in bee and pollen samples compared to leaf and flower samples reflective of pollen transmission affinity of individual viruses. Phylogenetic and pairwise analysis of the coat protein regions of the four most commonly detected viruses showed unique patterns of nucleotide sequence diversity, which could have implications in their evolution and management approaches. Coat protein sequences of CVA and PVF were broadly diverse with multiple distinct phylogroups identified, while PNRSV and PDV were more conserved. Conclusion: The pollen virome in fruit production systems is incredibly diverse, with CVA, PDV, PNRSV, and PVF widely prevalent in this region. Bee-mediated monitoring in agricultural systems is a powerful approach to study viral diversity and can be used to guide more targeted management approaches.

Indexed as

applecherrymetagenomicplant viruspollen

Identifiers

PMID38444533
PMCPMC10913894
OpenAlexW4391963133

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.