Evidence map›Paper›PMID 38443460›Full record

ArticleCommunications biology2024

EVATOM: an optical, label-free, machine learning assisted embryo health assessment tool.

Neha Goswami, Nicola Winston, Wonho Choi, Nastasia Z E Lai, Rachel B Arcanjo, Xi Chen, Nahil Sobh, Romana A Nowak, Mark A Anastasio, Gabriel Popescu

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Neha GoswamiDepartment of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA. nehag4@illinois.edu.ORCID 0000-0003-3000-1947
Nicola WinstonDivision of Reproductive Endocrinology and Infertility, Department of Obstetrics and Gynecology, University of Illinois at Chicago College of Medicine, Chicago, IL, 60612, USA.
Wonho ChoiDepartment of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
Nastasia Z E LaiDepartment of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
Rachel B ArcanjoDepartment of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0002-9758-2611
Xi ChenBeckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0002-8609-5391
Nahil SobhNCSA Center for Artificial Intelligence Innovation, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0001-6952-3465
Romana A NowakDepartment of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA. ranowak@illinois.edu.ORCID 0000-0001-6578-5695
Mark A AnastasioDepartment of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA. maa@illinois.edu.ORCID 0000-0002-3192-4172
Gabriel PopescuDepartment of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0002-8296-8095

Funding

The Center for Label-free Imagingand Multiscale Biophotonics (CLIMB)P41EB031772 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Mark A Anastasio · 2022 to 2026
$7.6M
Quantitative histopathology for cancer prognosis using quantitative phase imaging on stained tissuesR01CA238191 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ANASTASIO, MARK A, ELICEIRI, KEVIN WILLIAM · 2019 to 2023
$3.1M
The Role of Glial Cells in Chronic Pelvic Pain of EndometriosisR21HD100725 · NICHD · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI NOWAK, ROMANA A., STEELMAN, ANDREW JONATHAN · 2020 to 2021
$420k
High-throughput closed-loop direct aberration sensing and correction for multiphoton imaging in live animalsK99EB034164 · NIBIB · CORNELL UNIVERSITY · PI CHEN, XI · 2023 to 2024
$208k
NCI NIH HHS R01 CA238191NIBIB NIH HHS K99 EB034164NIBIB NIH HHS P41 EB031772
6 · The paper itself

Abstract

The combination of a good quality embryo and proper maternal health factors promise higher chances of a successful in vitro fertilization (IVF) procedure leading to clinical pregnancy and live birth. Of these two factors, selection of a good embryo is a controllable aspect. The current gold standard in clinical practice is visual assessment of an embryo based on its morphological appearance by trained embryologists. More recently, machine learning has been incorporated into embryo selection "packages". Here, we report EVATOM: a machine-learning assisted embryo health assessment tool utilizing an optical quantitative phase imaging technique called artificial confocal microscopy (ACM). We present a label-free nucleus detection method with, to the best of our knowledge, novel quantitative embryo health biomarkers. Two viability assessment models are presented for grading embryos into two classes: healthy/intermediate (H/I) or sick (S) class. The models achieve a weighted F1 score of 1.0 and 0.99 respectively on the in-distribution test set of 72 fixed embryos and a weighted F1 score of 0.9 and 0.95 respectively on the out-of-distribution test dataset of 19 time-instances from 8 live embryos.

Indexed as

Embryo, MammalianFertilization in VitroFemaleHealth StatusHumansMachine LearningMicroscopy, ConfocalPregnancy

Identifiers

PMID38443460
PMCPMC10915136

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.