Evidence map›Paper›PMID 38443410›Full record

ArticleScientific reports2024

A publicly available deep learning model and dataset for segmentation of breast, fibroglandular tissue, and vessels in breast MRI.

Christopher O Lew, Majid Harouni, Ella R Kirksey, Elianne J Kang, Haoyu Dong, Hanxue Gu, Lars J Grimm, Ruth Walsh, Dorothy A Lowell, Maciej A Mazurowski

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. GuidedMorph: Two-Stage Deformable Registration for Breast MRI.IEEE journal of biomedical and health informatics · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Christopher O LewDepartment of Radiology, Duke University Medical Center, Box 2731, Durham, NC, 27710, USA. christopher.lew@duke.edu.
Majid HarouniDepartment of Radiology, Duke University Medical Center, Box 2731, Durham, NC, 27710, USA.
Ella R KirkseyDepartment of Radiology, Duke University Medical Center, Box 2731, Durham, NC, 27710, USA.
Elianne J KangDepartment of Radiology, Duke University Medical Center, Box 2731, Durham, NC, 27710, USA.
Haoyu DongDepartment of Radiology, Duke University Medical Center, Box 2731, Durham, NC, 27710, USA.
Hanxue GuDepartment of Radiology, Duke University Medical Center, Box 2731, Durham, NC, 27710, USA.
Lars J GrimmDepartment of Radiology, Duke University Medical Center, Box 2731, Durham, NC, 27710, USA.
Ruth WalshDepartment of Radiology, Duke University Medical Center, Box 2731, Durham, NC, 27710, USA.
Dorothy A LowellDepartment of Radiology, Duke University Medical Center, Box 2731, Durham, NC, 27710, USA.
Maciej A MazurowskiDepartment of Radiology, Duke University Medical Center, Box 2731, Durham, NC, 27710, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Breast density, or the amount of fibroglandular tissue (FGT) relative to the overall breast volume, increases the risk of developing breast cancer. Although previous studies have utilized deep learning to assess breast density, the limited public availability of data and quantitative tools hinders the development of better assessment tools. Our objective was to (1) create and share a large dataset of pixel-wise annotations according to well-defined criteria, and (2) develop, evaluate, and share an automated segmentation method for breast, FGT, and blood vessels using convolutional neural networks. We used the Duke Breast Cancer MRI dataset to randomly select 100 MRI studies and manually annotated the breast, FGT, and blood vessels for each study. Model performance was evaluated using the Dice similarity coefficient (DSC). The model achieved DSC values of 0.92 for breast, 0.86 for FGT, and 0.65 for blood vessels on the test set. The correlation between our model's predicted breast density and the manually generated masks was 0.95. The correlation between the predicted breast density and qualitative radiologist assessment was 0.75. Our automated models can accurately segment breast, FGT, and blood vessels using pre-contrast breast MRI data. The data and the models were made publicly available.

Indexed as

Breast NeoplasmsDeep LearningBreast DensityFemaleHumansMagnetic Resonance ImagingRadiography

Identifiers

PMID38443410
PMCPMC10915139

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.