Evidence map›Paper›PMID 38443338›Full record

ArticleNature communications2024

Homo-BacPROTAC-induced degradation of ClpC1 as a strategy against drug-resistant mycobacteria.

Lukas Junk, Volker M Schmiedel, Somraj Guha, Katharina Fischel, Peter Greb, Kristin Vill, Violetta Krisilia, Lasse van Geelen, Klaus Rumpel, Parvinder Kaur and 18 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Review
  2. Review
  3. Proteostasis-targeted antibacterial strategies.Journal of microbiology (Seoul, Korea) · 2026
    Review
  4. Article
  5. Drug resistance mechanisms inFrontiers in pharmacology · 2026
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Total Synthesis of Mycoplanecin A.Organic letters · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Fighting Antimicrobial Resistance: Innovative Drugs in Antibacterial Research.Angewandte Chemie (International ed. in English) · 2025
    Review
  17. Review
  18. Protein Degradation in Focus.Nature chemical biology · 2024
    Article
  19. PROTAC-ing tuberculosis.Nature chemical biology · 2024
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Lukas Junk *Organic Chemistry I, Saarland University, Campus Building C4.2, 66123, Saarbrücken, Germany. lukasjunk0101@gmail.com.ORCID 0000-0002-5449-2253
Volker M Schmiedel *Boehringer Ingelheim RCV GmbH & Co. KG, Dr. Boehringer-Gasse 5-11, 1121, Vienna, Austria.ORCID 0000-0003-1192-5570
Somraj GuhaOrganic Chemistry I, Saarland University, Campus Building C4.2, 66123, Saarbrücken, Germany.
Katharina FischelBoehringer Ingelheim RCV GmbH & Co. KG, Dr. Boehringer-Gasse 5-11, 1121, Vienna, Austria.
Peter GrebBoehringer Ingelheim RCV GmbH & Co. KG, Dr. Boehringer-Gasse 5-11, 1121, Vienna, Austria.ORCID 0000-0002-6757-4370
Kristin VillHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Pharmaceutical Biology and Biotechnology, 40225, Düsseldorf, Germany.ORCID 0000-0002-2396-7658
Violetta KrisiliaHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Pharmaceutical Biology and Biotechnology, 40225, Düsseldorf, Germany.ORCID 0009-0000-3256-8627
Lasse van GeelenHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Pharmaceutical Biology and Biotechnology, 40225, Düsseldorf, Germany.
Klaus RumpelBoehringer Ingelheim RCV GmbH & Co. KG, Dr. Boehringer-Gasse 5-11, 1121, Vienna, Austria.ORCID 0000-0002-6755-0985
Parvinder KaurFoundation for Neglected Disease Research, Plot No. 20A, KIADB Industrial Area, Veerapura Village, Doddaballapur, Bengaluru, 561203, Karnataka, India.ORCID 0000-0001-9154-3278
Ramya V KrishnamurthyFoundation for Neglected Disease Research, Plot No. 20A, KIADB Industrial Area, Veerapura Village, Doddaballapur, Bengaluru, 561203, Karnataka, India.
Shridhar NarayananFoundation for Neglected Disease Research, Plot No. 20A, KIADB Industrial Area, Veerapura Village, Doddaballapur, Bengaluru, 561203, Karnataka, India.ORCID 0000-0002-7781-7399
Radha Krishan ShandilFoundation for Neglected Disease Research, Plot No. 20A, KIADB Industrial Area, Veerapura Village, Doddaballapur, Bengaluru, 561203, Karnataka, India.
Mayas SinghFoundation for Neglected Disease Research, Plot No. 20A, KIADB Industrial Area, Veerapura Village, Doddaballapur, Bengaluru, 561203, Karnataka, India.
Christiane KofinkBoehringer Ingelheim RCV GmbH & Co. KG, Dr. Boehringer-Gasse 5-11, 1121, Vienna, Austria.ORCID 0000-0003-2515-8843
Andreas MantoulidisBoehringer Ingelheim RCV GmbH & Co. KG, Dr. Boehringer-Gasse 5-11, 1121, Vienna, Austria.
Philipp BiberBoehringer Ingelheim RCV GmbH & Co. KG, Dr. Boehringer-Gasse 5-11, 1121, Vienna, Austria.
Gerhard GmaschitzBoehringer Ingelheim RCV GmbH & Co. KG, Dr. Boehringer-Gasse 5-11, 1121, Vienna, Austria.
Uli KazmaierOrganic Chemistry I, Saarland University, Campus Building C4.2, 66123, Saarbrücken, Germany.
Anton MeinhartResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.
Julia LeodolterResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.ORCID 0000-0003-3632-056X
David HoiResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.
Sabryna JunkerResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.ORCID 0000-0001-9846-4505
Francesca Ester MorrealeResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.ORCID 0000-0001-9416-0459
Tim ClausenResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.ORCID 0000-0003-1582-6924
Rainer KalscheuerHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Pharmaceutical Biology and Biotechnology, 40225, Düsseldorf, Germany.ORCID 0000-0002-3378-2067
Harald WeinstablBoehringer Ingelheim RCV GmbH & Co. KG, Dr. Boehringer-Gasse 5-11, 1121, Vienna, Austria. harald.weinstabl@boehringer-ingelheim.com.ORCID 0000-0003-1308-2730
Guido BoehmeltBoehringer Ingelheim RCV GmbH & Co. KG, Dr. Boehringer-Gasse 5-11, 1121, Vienna, Austria. guido.boehmelt@boehringer-ingelheim.com.ORCID 0000-0001-6636-0832

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antimicrobial resistance is a global health threat that requires the development of new treatment concepts. These should not only overcome existing resistance but be designed to slow down the emergence of new resistance mechanisms. Targeted protein degradation, whereby a drug redirects cellular proteolytic machinery towards degrading a specific target, is an emerging concept in drug discovery. We are extending this concept by developing proteolysis targeting chimeras active in bacteria (BacPROTACs) that bind to ClpC1, a component of the mycobacterial protein degradation machinery. The anti-Mycobacterium tuberculosis (Mtb) BacPROTACs are derived from cyclomarins which, when dimerized, generate compounds that recruit and degrade ClpC1. The resulting Homo-BacPROTACs reduce levels of endogenous ClpC1 in Mycobacterium smegmatis and display minimum inhibitory concentrations in the low micro- to nanomolar range in mycobacterial strains, including multiple drug-resistant Mtb isolates. The compounds also kill Mtb residing in macrophages. Thus, Homo-BacPROTACs that degrade ClpC1 represent a different strategy for targeting Mtb and overcoming drug resistance.

Indexed as

Mycobacterium smegmatisMycobacterium tuberculosisDimerizationDrug DiscoveryProteolysis

Identifiers

PMID38443338
PMCPMC10914731

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.