Evidence map›Paper›PMID 38442041›Full record

ReviewJournal of proteome research2024

Recent Contributions of Proteomics to Our Understanding of Reversible N

Liya Popova, Rachel A Carr, Valerie J Carabetta

Abstract readReview
In one paragraph

Review in Journal of proteome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Liya PopovaDepartment of Biomedical Sciences, Cooper Medical School of Rowan University, Camden, New Jersey 08103, United States.
Rachel A CarrDepartment of Biomedical Sciences, Cooper Medical School of Rowan University, Camden, New Jersey 08103, United States.
Valerie J CarabettaDepartment of Biomedical Sciences, Cooper Medical School of Rowan University, Camden, New Jersey 08103, United States.ORCID 0000-0002-2211-0556

Funding

Investigation of the physiological significance of protein acetylation in Bacillus subtilisR35GM138303 · NIGMS · ROWAN UNIVERSITY · PI CARABETTA, VALERIE JEAN · 2020 to 2024
$1.9M
NIGMS NIH HHS R35 GM138303
6 · The paper itself

Abstract

Post-translational modifications (PTMs) have been extensively studied in both eukaryotes and prokaryotes. Lysine acetylation, originally thought to be a rare occurrence in bacteria, is now recognized as a prevalent and important PTM in more than 50 species. This expansion in interest in bacterial PTMs became possible with the advancement of mass spectrometry technology and improved reagents such as acyl-modification specific antibodies. In this Review, we discuss how mass spectrometry-based proteomic studies of lysine acetylation and other acyl modifications have contributed to our understanding of bacterial physiology, focusing on recently published studies from 2018 to 2023. We begin with a discussion of approaches used to study bacterial PTMs. Next, we discuss newly characterized acylomes, including acetylomes, succinylomes, and malonylomes, in different bacterial species. In addition, we examine proteomic contributions to our understanding of bacterial virulence and biofilm formation. Finally, we discuss the contributions of mass spectrometry to our understanding of the mechanisms of acetylation, both enzymatic and nonenzymatic. We end with a discussion of the current state of the field and possible future research avenues to explore.

Indexed as

BacteriaLysineProtein Processing, Post-TranslationalProteomicsAcetylationAcylationBacterial ProteinsBiofilmsMass SpectrometryVirulenceBacterial ProteinsLysineacetylacetylationacetylomeKATKDACpost-translational modificationPTMsuccinylationsuccinylome

Identifiers

PMID38442041
PMCPMC11296938

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.