Evidence map›Paper›PMID 38441697›Full record

ArticleArchives of virology2024

A single amino acid at position 31 in the N-terminus of the coat protein of cucumber mosaic virus determines its avirulence function for RCY1-conferred virus resistance.

Hideki Takahashi, Yuki Ando, Yoshinori Kanayama, Shuhei Miyashita

Abstract read
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In one paragraph

Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.6field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Hideki TakahashiGraduate School of Agricultural Science, Tohoku University, Sendai, 980-0845, Japan. hideki.takahashi.d5@tohoku.ac.jp.ORCID http://orcid.org/0000-0001-5398-1867
Yuki AndoGraduate School of Agricultural Science, Tohoku University, Sendai, 980-0845, Japan.
Yoshinori KanayamaGraduate School of Agricultural Science, Tohoku University, Sendai, 980-0845, Japan.
Shuhei MiyashitaGraduate School of Agricultural Science, Tohoku University, Sendai, 980-0845, Japan. shuhei.miyashita.d7@tohoku.ac.jp.
Tohoku University · JP

Funding

Japan Society for the Promotion of Science 19H02953Japan Society for the Promotion of Science 19K22300Japan Society for the Promotion of Science 21H04721Japan Society for the Promotion of Science 22KK0081Japan Society for the Promotion of Science 23K18017
6 · The paper itself

Abstract

The coat protein (CP) of the cucumber mosaic virus (CMV) yellow strain [CMV(Y)], but not the CMV B2 strain [CMV(B2)], serves as an avirulence determinant against the NB-LRR class RCY1 of Arabidopsis thaliana. To investigate the avirulence function, a series of binary vectors were constructed by partially exchanging the CP coding sequence between CMV(Y) and CMV(B2) or introducing nucleotide substitutions. These vectors were transiently expressed in Nicotiana benthamiana leaves transformed with modified RCY1 cDNA. Analysis of hypersensitive resistance-cell death (HCD), CP accumulation, and defense gene expression at leaf sites infiltrated with Agrobacterium indicated that a single amino acid at position 31 of the CP seems to determine the avirulence function.

Indexed as

ArabidopsisCucumovirusCytomegalovirus InfectionsAmino AcidsArabidopsis ProteinsDNA, ComplementaryHumansSerine-Arginine Splicing FactorsAmino AcidsArabidopsis ProteinsDNA, ComplementaryRCY1 protein, ArabidopsisSerine-Arginine Splicing Factors

Identifiers

PMID38441697
OpenAlexW4392458658

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.