Evidence map›Paper›PMID 38441467›Full record

ArticleMicrobiology spectrum2024

Whole-genome sequencing-based antimicrobial resistance and shedding dynamics of

Véronique Bernier Gosselin, Javier E Fernandez, Catherine Ollagnier, Isabelle Morel, Raphael Siegenthaler, Alexandra Collaud, Mireille Meylan, Vincent Perreten

Open access · goldAbstract readObservational Study, Veterinary
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology spectrum, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Emerging hybrid shigatoxigenic and enteropathogenicClinical microbiology reviews · 2025
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Véronique Bernier GosselinClinic for Ruminants, Vetsuisse Faculty, University of Bern, Bern, Switzerland.ORCID 0000-0003-0448-5386
Javier E FernandezDivision of Molecular Bacterial Epidemiology and Infectious Diseases, Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Catherine OllagnierPigs, Agroscope, Posieux, Switzerland.
Isabelle MorelRuminant Nutrition and Emissions, Agroscope, Posieux, Switzerland.
Raphael SiegenthalerResearch Contracts Animals, Agroscope, Posieux, Switzerland.
Alexandra CollaudDivision of Molecular Bacterial Epidemiology and Infectious Diseases, Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Mireille MeylanClinic for Ruminants, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Vincent PerretenDivision of Molecular Bacterial Epidemiology and Infectious Diseases, Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.ORCID 0000-0001-5722-9445
University of Bern · CHAgroscope · CH

Funding

Clinic for Ruminants, University of Bern 33-014UB | Institute of Veterinary Bacteriology, University of Bern (IVB) 660-50
6 · The paper itself

Abstract

The fattening of calves is often associated with high antimicrobial use and the selection of antimicrobial resistance (AMR). The objective of this observational longitudinal study was to describe the AMR and strain dynamics, using whole-genome sequencing (WGS), of fecal IMPORTANCE: The continued emergence and spread of antimicrobial resistance (AMR) determinants are serious global concerns. The dynamics of AMR spread and persistence in bacterial and animal host populations are complex and not solely driven by antimicrobial selection pressure. In calf fattening, both antimicrobial use and carriage prevalence of antimicrobial-resistant bacteria are generally recognized as high. This study provides new insights into the short-term, within-farm dynamics and transmission of AMR determinants in

Indexed as

Anti-Infective AgentsEscherichia coli InfectionsThiamphenicolAnimalsAnti-Bacterial AgentsCattleDrug Resistance, BacterialEscherichia coliLongitudinal StudiesTetracyclinesAnti-Bacterial AgentsAnti-Infective AgentsflorfenicolTetracyclinesThiamphenicolantimicrobial resistancecattleEscherichia colifecal carriagemolecular epidemiology

Identifiers

PMID38441467
PMCPMC10986552
OpenAlexW4392457363

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.